LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1229g00001	ATGAAGTTCAACATTGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAATGGAGATGCACTTGGGGAGGAGTTTAAAGGTTATGTATTCAAAATTACTGGAGGCTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGGGTTCGCCTGCTTCTTCATAGGGGAACTCCATGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTATCTGTGCTTAACTTGGTAATTGTGAAGAAGGGAGAAAATGACTTGCCAGGATTGACTGACGTTGAGAAGCCAAGGATGAGAGGGCCAAAGAGAGCCTCCAAAATCCGGAAACTGTTCAACCTTTCTAAAGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGGACATTTACAACAAAAGCAGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAAAGACTAGTCACTCCTCTCACTCTCCAAAGGAAGCGGGCACGGATTGCTGATAAGAAAAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCCAAGAGGAGGTCCAAGATTTCCAGTGCTACCAAGGCAGCTGTATAG	744	0.4772	MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSATKAAV	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1229g00001	247	Coils	Coil	189	216	-	-
	Vium1229g00001	247	MobiDBLite	consensus disorder prediction	219	237	-	-
	Vium1229g00001	247	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vium1229g00001	247	PIRSF	RPS6e	1	247	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Vium1229g00001	247	MobiDBLite	consensus disorder prediction	219	247	-	-
	Vium1229g00001	247	Gene3D	-	133	234	-	-
	Vium1229g00001	247	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Vium1229g00001	247	PANTHER	40S RIBOSOMAL PROTEIN S6	1	240	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vium1229g00001	247	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1229g00001	Vium-Chr1229	7730	12202	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1229g00001	1	242	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	72.727	1.36e-119	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1229g00001	K02991		-	gmx:547746	440.654