Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1226g00009 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCCGAAGAAGATGCAACACTCAAAGCCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGCCTACGGTGGCTGAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGGCAAGTTTTAATTTTCAAATTATGTAAATTTCACACTATAATATTCACCATCCATTAA 324 0.4352 MGRAPCCDKANVKRGPWSPEEDATLKAYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRQVLIFKLCKFHTIIFTIH 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1226g00009 107 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium1226g00009 107 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium1226g00009 107 CDD SANT 16 62 IPR001005 -
Vium1226g00009 107 Gene3D - 6 68 - -
Vium1226g00009 107 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vium1226g00009 107 PANTHER OS09G0431300 PROTEIN 1 93 - -
Vium1226g00009 107 SUPERFAMILY Homeodomain-like 15 93 IPR009057 -
Vium1226g00009 107 SMART sant 13 64 IPR001005 -
Vium1226g00009 107 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1226g00009 Vium-Chr1226 99127 100398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1226g00009 1 93 MYB Transcription Factor Family AT5G65790 82.796 4.15e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1226g00009 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1226g00009 K09422 - vum:124825424 235.343