Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12265g00001 ATGGCATATTCAGAAATGGAAAACGAGAACGGTTCGTCGAACTCAAAGCCAACGAGGGACACCAAGGGAAAGATCATCACTTGCAAAGCTGCGGTGGCTTATGGTCCCGGAGAGCCCTTCGTGGTGGAGGAAATTCTTGTTCATCCTCCTCAGAAATTTGAGGTTCGAGTCAAAATTCTTTACACTTCAATTTGCCACACCGATCTCAGCGCATGGCGAGGCGAGAACGAGTCTCAGCGCGCCTACCCTCGTATCTTAGGCCACGAAGCATCCGGAATCGTGGATAGTGTGGGGGAAGGGGTGAGTGAGGTGGAGGAAGGGGACACAGTGGTGCCAATATTCAACGGTGAGTGTGGAGAGTGTTGTTATTGCAAGTGTGAGAAGAGTAACAAGTGTGAGAGGTATGGGGTGAACCCCATGAAGAAGGTGATGGAAGGAGATGGCAGAAGCAGATTCTCAACAGTTGATGGAAAACCCATCTTCCATTTCTTGAACACTTCCACATTCTCGGAGTACACGGTGGTCGATTCCGCCTGCGTCGTCAGCTTTCGTCACTCCGATCACACTCTCACCACCAAAAACCTCACCTTGCTCAGCTGTGGCGTCTCCACAGGTGTTGGAGCTGCTTGGAATATTGCCAATGTGCATTCTGGTTCATCAGTCGCTGTTTTTGGTCTTGGAGCTGTTGGGTTAGCTGTTGCAGAAGGGGCACGAGGCAGAGGTGCTTCCAGAATAATAGGTGTCGACATCAACCCTGATAAATTCATCAAAGCCAAAGCAATGGGAGTCACTGATTTCATAAACCCAAAGGATGAAGAGAAGCCATTATACGAGAGAATAAGAAAAATGACTGATGGAGGTGTAGACTACAGTTTTGAATGTACTGGAAACGTGGATGTTCTAAGGGATGCATTTTTGTCTGCTCATGCGGGTTGGGGATTGACTGTGATATTGGGAATTCATGCATCACCAAGCTTGCTTCCTATCCACCCGATGGAGCTCTTTGCTGGCCGCAGTATCATTGGATCGGTATTTGGAGGTTTCAAAGGGAAAAGTCAGTTGCCTCATTTTGCCACACAATGTGGAAATGGAGTTGTGAAGTTGGATAATTTCATCACTCACGAGCTACCCATTGAGGAGATAGACAAAGCCTTCGATCTTTTGATCACAGGGAAATCACTGAGATGTCTTCTGCATTTCTAA 1203 0.4755 MAYSEMENENGSSNSKPTRDTKGKIITCKAAVAYGPGEPFVVEEILVHPPQKFEVRVKILYTSICHTDLSAWRGENESQRAYPRILGHEASGIVDSVGEGVSEVEEGDTVVPIFNGECGECCYCKCEKSNKCERYGVNPMKKVMEGDGRSRFSTVDGKPIFHFLNTSTFSEYTVVDSACVVSFRHSDHTLTTKNLTLLSCGVSTGVGAAWNIANVHSGSSVAVFGLGAVGLAVAEGARGRGASRIIGVDINPDKFIKAKAMGVTDFINPKDEEKPLYERIRKMTDGGVDYSFECTGNVDVLRDAFLSAHAGWGLTVILGIHASPSLLPIHPMELFAGRSIIGSVFGGFKGKSQLPHFATQCGNGVVKLDNFITHELPIEEIDKAFDLLITGKSLRCLLHF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12265g00001 400 Gene3D - 31 395 - -
Vium12265g00001 400 FunFam S-(hydroxymethyl)glutathione dehydrogenase 205 343 - -
Vium12265g00001 400 Gene3D - 205 343 - -
Vium12265g00001 400 Pfam Zinc-binding dehydrogenase 228 347 IPR013149 -
Vium12265g00001 400 Pfam Alcohol dehydrogenase GroES-like domain 54 148 IPR013154 -
Vium12265g00001 400 MobiDBLite consensus disorder prediction 1 21 - -
Vium12265g00001 400 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 87 101 IPR002328 GO:0008270|GO:0016491
Vium12265g00001 400 PANTHER ALCOHOL DEHYDROGENASE 23 397 - -
Vium12265g00001 400 SUPERFAMILY GroES-like 21 224 IPR011032 -
Vium12265g00001 400 SUPERFAMILY GroES-like 350 400 IPR011032 -
Vium12265g00001 400 FunFam Alcohol dehydrogenase 6 31 217 - -
Vium12265g00001 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 194 360 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12265g00001 Vium-Chr12265 15216 22464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12265g00001 54 389 Monolignol Biosynthesis Gene Families AT2G21890 25.714 9.59e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12265g00001 K00001 - gmx:100815166 633.639