Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12251g00003 ATGGCAAGTCACTCACAATCCTTTGTCCAGATTCCAGCAGTAAAGTTTACCAAGCTTTTCATCAATGGAGAATTTATAGATTCTATTTCAGGGAAAACGTTTGAGACTGTTGATCCAAGAACAGAGGAAGTGATTGTCGAAATAGCAGAAGCTACCAAAGAAGACGTTGATATTGCTGTGAAGGCTGCACGCGAAGCATTTGATTTTGGTCCATGGCCACGTATGCCCGGTGCTGAAAGAGCAAAGATTATGCTGAAATGGGCGCAACTAATTGAACAGAACGTAGAAGAAATAGCAGCATTGGACACCATTGATGGAGGGAAGCTTTTCAGTTGGTGTAAGGCTGTGGATGTTCCTGAAGCCTGCAACATCCTACGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAAATGTGTTCAAAACATCTCGTGACCTCCACTTGTATTCTCTTATGGAACCTGTTGGTGTTGTTGGTCACATTATCCCTTGGAATTTCCCTACTGTCATGTTCTTCGCCAAGGTCGCCCCGGCCTTGGCTGCTGGTTGCTCCATGGTCATCAAGCCTGCTGAGCAAACACCTCTCTCATCACTCTTCTATGCTCATCTTGCTAAGTTGGCTGGTATCCCAGATGGAGTGCTTAATGTAGTACCTGGATTTGGCTCAACTGCAGGGGCTGCAATAAGCTCACATATGGACATTGATGCGGTCAGTTTTACAGGTTCAACAGAAACAGGTCGTAAAATAATGCAGGCTGCGGCCTTGAGCAATTTGAAACCTGTTTCTCTTGAATTTGGAGGAAAGTCACCAGTGTTGATTTTTGATGACGCTGATATAGACAAAGCTGTTGATCTTGCTCTCTTTGGCATCCTACACAATAAGGGAGAAATCTGTGTTGCATTCTCCAGAGTTTTTGTCCAGGAAGGGATATATGATGAATTTGAGAAAAGGGTTGTGGAGAAGGCTAAAACTTGGGTAGTAGGAGACCCTTTTGATCCAAAAGTTCAACAGGGACCCCAAACTAGTAAGGCACAATTTGATAAAATTCTTTCCTATATTGATCATGGAAAGAGTGAAGGAGCCACGCTATTGACTGGGGGTAAGACAGTGGGCAAAAAGGGATACTACATTGAGCCAACCATTTTTACCAATGTTAAGGAGGAGATGCTAATTGCACAAGAGGAAATATTTGGACCTGTGATGACACTTTCTAAGTTCAAAACCATTGAGGATGCAATTAAGAAAGGCAACAGCTCCAAATATGGCCTAGCAGCAGGGATTGTGACCAAGAACTTGGATATTGCCAACACTGTATCAAGGTCCATCCGTGCAGGCATCATTTGGATCAACTGCTTCTTTGCATTTGATATCGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGACTGGAAGCACTTCATAAGTATCTTAAAGTTAAATCTGTTGCAACTCCTATCTACAATTCTCCCTGGCTTTGA 1494 0.4297 MASHSQSFVQIPAVKFTKLFINGEFIDSISGKTFETVDPRTEEVIVEIAEATKEDVDIAVKAAREAFDFGPWPRMPGAERAKIMLKWAQLIEQNVEEIAALDTIDGGKLFSWCKAVDVPEACNILRYYAGAADKIHGNVFKTSRDLHLYSLMEPVGVVGHIIPWNFPTVMFFAKVAPALAAGCSMVIKPAEQTPLSSLFYAHLAKLAGIPDGVLNVVPGFGSTAGAAISSHMDIDAVSFTGSTETGRKIMQAAALSNLKPVSLEFGGKSPVLIFDDADIDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKRVVEKAKTWVVGDPFDPKVQQGPQTSKAQFDKILSYIDHGKSEGATLLTGGKTVGKKGYYIEPTIFTNVKEEMLIAQEEIFGPVMTLSKFKTIEDAIKKGNSSKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLKVKSVATPIYNSPWL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12251g00003 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 456 IPR016163 GO:0016620
Vium12251g00003 497 Pfam Aldehyde dehydrogenase family 27 487 IPR015590 GO:0016491
Vium12251g00003 497 SUPERFAMILY ALDH-like 9 493 IPR016161 GO:0016491
Vium12251g00003 497 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 9 488 - -
Vium12251g00003 497 FunFam Aldehyde dehydrogenase3 267 456 - -
Vium12251g00003 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Vium12251g00003 497 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 21 285 - -
Vium12251g00003 497 FunFam Aldehyde dehydrogenase, putative 459 485 - -
Vium12251g00003 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 485 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12251g00003 Vium-Chr12251 14295 19409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12251g00003 9 497 Aldehyde Dehydrogenase Gene Family AT3G24503 68.776 0.0 719