Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12242g00001 ATGTTTGCTGCACAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGACTATTCATCTCCATCAATTGATGAGGGTTGGATAATTATAAATGTTAAAAACAAGCCCAAGGTGATGAAGTCTACTACAATGCTCGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGACGAGGTAGTTAAAGTTTGTGTAGTAGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATATACAGAAATCCATGAAGAAGTTGTTATCAAAAGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTTCCTATATCTTCCAATCCACGGATGGGCCTATGCACAGAAGACCTTCTTTGAATGGTTTATGTCAGGCTGTTTTGGGTCGTGCTGTTCGGGAAAAAGGTGCTCCACATAATTGTCTAGATGATGCATGTACAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAGGGAATTTCCAATTTCACTGGCTCAAGAGCGTGTTCCAGAAAGTGAGACCACAAAGCTTTTTCTTCACCGGATACCAAACACTGTAAACACTGAAGCACTGCATACCATTGTTCCTGGAGAATTCAGAACGGAACTGCAGTCTACCAGGAAAGTTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGATGGCGCATATGAAAAAGTCCAAGGAATCCAATTAAAGGTACATATATGA 879 0.405 MFAAQRLVQITLQHPLYPLDYSSPSIDEGWIIINVKNKPKVMKSTTMLAVDCEMVLCEDGTDEVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADIQKSMKKLLSKGAILVGHSLHNDLRVLKLDHVRVIDTSYIFQSTDGPMHRRPSLNGLCQAVLGRAVREKGAPHNCLDDACTAMNLVLAKIKHGVDREFPISLAQERVPESETTKLFLHRIPNTVNTEALHTIVPGEFRTELQSTRKVQGRHYSALAVFKNTQEADGAYEKVQGIQLKVHI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12242g00001 292 Pfam Exonuclease 49 197 IPR013520 -
Vium12242g00001 292 SMART exoiiiendus 46 207 IPR013520 -
Vium12242g00001 292 CDD REX1_like 48 199 IPR034922 -
Vium12242g00001 292 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 43 220 IPR047021 GO:0004527
Vium12242g00001 292 FunFam Small RNA degrading nuclease 3 42 216 - -
Vium12242g00001 292 SUPERFAMILY Ribonuclease H-like 47 202 IPR012337 -
Vium12242g00001 292 Gene3D - 42 215 IPR036397 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12242g00001 48 197 C2H2 Transcription Factor Family AT2G48100 30.909 7.95e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12242g00001 K14570 - gmx:100785565 460.299