Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12236g00002 ATGGGAAGCAGAAAGGAAGAAGAGAAGAATGAGAAAATTATCAGAGGTCTCATGAAGCTTCCCCCAAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAGTTCACTTCGCAAGAAGTCGATGCTCTTCAAATTGGGGGTAACCAGCGTGCAAGGGAAATATACTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAGTAAGGGAATTTATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAGTGAAGTCTTCAGAAAAGCCCCCAAGAGATGCACAGAGCCCTGGAATTCATGAAGATGAGGTTAGGCGTGCTAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAGTATGAGGATCGGAAGTATGGAAAACAAGCAGCTGCACTCACCAGGAAGCCTGGTTCAGATAAAGCTCGATATGAAGGGAAAATATCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGACTTTTCTGTTTTTAGTGGTGGCGAACAATTCAAATCTGATGTTCAGTCACCCAATTCCTATAAAGATATTAAGATTAGCAGTCCATCCTATCAAAGGCGCTCTGGTTCCAGTTCGAGTGAAGATGTGTGGTACCACGCAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAGAGAGATGGAAATGGATTTCGTCCTCCACAGATAACTGCATCAGAACAATCAGGAGACAACAAAATTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATCCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCATCATTTGAATCAGCAGCAGCGGCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCCTTTTCATCTGCAGTTCCATTTTTCAATGACAATCAACTTCCTCAAGCATCCCAACCTGCATCCATTGAATTTTTTGCGGATCTCTCTGAGAAGCCTTCCACTGTAAACTCAAATGAAAAGGCACTGGATTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGACATGCCTCAGAGCACCTCATCCACTGCACAAATGGAAATTCCAGCTACTGTACCCTTAAGTGCTAAATCTTTACAAGAAAGATTTGATCCGTTTTCCACTTCAAATGCAAACACACAATGGCCATCTTTTGAATTTTCAAGTGGCAGTATACATTCTTCACTTACATCTAATTTATGGAATGATGGTGTGTGGAATAGTGAAGAACAAGTTTCCGCTATATCAGCAAACACTCAACCATGGAATGCATTTGAAGATTATGGTGGCCATCATCCTGTGGATGCCCTAAGTCAAGGATTACAATTGCACAATTTTCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGAGTCTGAGGGGTCCAAAAGTGATGGTGTTAAAGGCATTGTCCCTGTTGATGCATTTGAAAATCATGACATCCCATCGCATGTCAATGATTCAGAATATCCACCATCCATGCTTCCTTCAATGGGAGACATTGAACCTATTGGAACGAAATGTAAATCAACTAATCCATTTGATTTTCCTGATGAATCTGATGTAGCTCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATTCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAATCTTGGCTTCCCCAAAACACGGTGACCCCTTTTATTTCCTCTTCTGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAGGTTCTCAAATACAGAACATCCAGACACCAGAACCAGTTGCTTCATTTGGGGGAAATCCTTTTGCATAG 2061 0.4124 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQIGGNQRAREIYLKNWDFQRQRLPDNSNVDKVREFIKSVYVDGRYAAVKSSEKPPRDAQSPGIHEDEVRRASSYHSYSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVQSPNSYKDIKISSPSYQRRSGSSSSEDVWYHARNASLETNVNAKRDGNGFRPPQITASEQSGDNKISSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKASFESAAAASQAPTVDLFQSSFSSAVPFFNDNQLPQASQPASIEFFADLSEKPSTVNSNEKALDLSVPKNEGWATFDMPQSTSSTAQMEIPATVPLSAKSLQERFDPFSTSNANTQWPSFEFSSGSIHSSLTSNLWNDGVWNSEEQVSAISANTQPWNAFEDYGGHHPVDALSQGLQLHNFPSADNQILGLRESEGSKSDGVKGIVPVDAFENHDIPSHVNDSEYPPSMLPSMGDIEPIGTKCKSTNPFDFPDESDVAHNNMFLDMSSLQDALPDSLFPTSFHSGIAESWLPQNTVTPFISSSGEGGLSFMAVQSPGSQIQNIQTPEPVASFGGNPFA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12236g00002 686 MobiDBLite consensus disorder prediction 134 148 - -
Vium12236g00002 686 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Vium12236g00002 686 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Vium12236g00002 686 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Vium12236g00002 686 MobiDBLite consensus disorder prediction 126 162 - -
Vium12236g00002 686 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Vium12236g00002 686 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Vium12236g00002 686 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Vium12236g00002 686 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
Vium12236g00002 686 MobiDBLite consensus disorder prediction 274 299 - -
Vium12236g00002 686 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Vium12236g00002 686 CDD ArfGap_AGFG 11 123 - -
Vium12236g00002 686 MobiDBLite consensus disorder prediction 229 261 - -
Vium12236g00002 686 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Vium12236g00002 686 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12236g00002 Vium-Chr12236 16957 23755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12236g00002 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 2.59e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12236g00002 K15044 - gmx:100794964 1087.4