Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12232g00004 ATGTTTGCACCATTTCCACCTCTACCCCCTATAGCTCGTTCTCCTCCCAAAAATTCTAAACCTACAGTCCAGACTCCTGCTCCTCCAACATCTAGCGCTGATGACAAAAAGAAGAAAACAATTATTTTAGCTACCACTTTATCAGGTGTTGTAATCTTGATAGGCTTGTTCCTATGCTATCGTGAGACCAAAAAGAAGAGAAGTGATAGGGATGACAGGCCTTTGCTCGTATTAACCTCGGATGATTATACTGGCGGTACAAGGAAGGTTGTTCAATTAGGAAATTCTAGAAGGGATGAATATGGCATTGGCGATGGAAAGAACCCTTCTTATGTTAGAAATTTGTCCAGTAGGAAGGGTGTAGATGTCAACGTCTCAATGGTTGACATAGCATCATCATCATCAGAAGGCGGAAGAAAACTAACAGTATCCCCTAGTGTAAAGTCTGACCCTCCTCCTCCTCCTCCTCCCCCACCTCCTCCTTCTTCTTCTTCTTCTCTTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCATCTTCTTCCTCTTCTTCTACTCCTCCTCCTGGCCGTACTGCTGGACCACCACCACCACCTCCTCCCGCTAATCGTACACCGCCGCCCCCAAAAGGTGCTCATGCTCCGCCAGCTCCTCCCAAACCAGTTGGAGGTGCGAATCATGGACCACTACTTCCTAAAGAAGGAAGTTCAAATGACGGCGATGCTCAAGCTCCAAAACCAAAACTAAAGCCATTTTTTTGGGATAAGGTTAATGCAAAGCCTGGCCAAACAATGGTGTGGCATGAGATCAGTTCGGGATCATTCGTGATCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCGCCAACCAGAACAAGAATGATCGCAAAAGAGATTCATCCTTAGAAAATTCAGTGCAATATATTAAGCTTATTGATCCTAGGAAAGCACAGAACTTGTCAATTCTTTTGCGAGCTCTGAACGTCACAACAGAAGAAGTTGTCGATGCTCTTGTAGAAGGAAATGAGATTCCTATTGAGCTGATACAGACGTTGCTGAAGATGGCACCTACACAAGATGAGGAACTGAAGCTAAGGCTATTCACAGGACAACTGCATGAACTAGGCCCAGCAGAGAGGTTTCTCAAAGTGTTGATTGAGATACCATTCGCTTTCAAACGTCTTGAATGTCTGTTGTTCATGCATAACCTTCAAGAAGATTTCTCAAGCATTAAGGAATCCTTTGCCACGTTAGAGGTGGCAAGCAACGATCTGAGAAAAAGCAGGCTATTCCTGAAACTCCTAGAAGCAGTTCTGAAAACCGGCAACCGTATGAATGACGGAACCTACCGCGGCCGTGCGCAAGCATTCAGGCTCGACACCCTCCTCAAACTCTCCGACGTCAAGGGAACAGACGGCAAGACCACGCTCCTGCACTTCGTCGTCGAGGAGATCATCCGCTCCGAGGGAATCCGCGCCGCGCGCAACGAAAGAGCCAGCCGGAGCATCTCTAGCGTCAACACCAGCGACGAATCCGACGAGGGCGAGGAGTCCGAGGAGCACTACCGCAGCGTCGGCCTCCAGGTGGTGTCGAGCCTCGGTGCGGAACTCGAGGCCGTGAAGAAGGCGGCGCTGATAGACGGCGACGCGCTCACCACGACGGTGTCGAAGCTGGGGCACTCGTTGGTGAAGACGCAGAATTTTCTTGACACGGAAATGAAGAACATCGCGGAAGAGAGCGAGTTCCAGAACAGCATGGAGCAGTTCATGGTAAACGCGAGGAAAGAGGTGATGTGGATGGTGGAGGAGGAGAAGAGGATAATGGCGCTGGTTAAGAGCACTGCCGATTACTTTCACGGCAATGCCGGGAAGGATGAAGGTTTACGTTTGTTCCTAATCGTACGTGATTTCTTGATCATATTGGACAAGGTTTGCAAAGAAGTGAGGGACACGACCATGACGCCGGCGAAGGCTCCCACCACTACCAAGAAGAAGCCTAAGACTCCTACGGCTTCTTCCCCTAACGCGCGTAATCCAGATTCGCCAAAGCCATCCACTAATCTCCACAGTAAGCTCTTTCCTGCCATTGCTGGGAGGAGAATGGATTACTCTAGCTCTGATAGCTCCGATGATGACGACGACTAA 2139 0.4923 MFAPFPPLPPIARSPPKNSKPTVQTPAPPTSSADDKKKKTIILATTLSGVVILIGLFLCYRETKKKRSDRDDRPLLVLTSDDYTGGTRKVVQLGNSRRDEYGIGDGKNPSYVRNLSSRKGVDVNVSMVDIASSSSEGGRKLTVSPSVKSDPPPPPPPPPPPSSSSSLPPPPPPPPPPSSSSSSTPPPGRTAGPPPPPPPANRTPPPPKGAHAPPAPPKPVGGANHGPLLPKEGSSNDGDAQAPKPKLKPFFWDKVNAKPGQTMVWHEISSGSFVINEEMMESLFGCANQNKNDRKRDSSLENSVQYIKLIDPRKAQNLSILLRALNVTTEEVVDALVEGNEIPIELIQTLLKMAPTQDEELKLRLFTGQLHELGPAERFLKVLIEIPFAFKRLECLLFMHNLQEDFSSIKESFATLEVASNDLRKSRLFLKLLEAVLKTGNRMNDGTYRGRAQAFRLDTLLKLSDVKGTDGKTTLLHFVVEEIIRSEGIRAARNERASRSISSVNTSDESDEGEESEEHYRSVGLQVVSSLGAELEAVKKAALIDGDALTTTVSKLGHSLVKTQNFLDTEMKNIAEESEFQNSMEQFMVNARKEVMWMVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCKEVRDTTMTPAKAPTTTKKKPKTPTASSPNARNPDSPKPSTNLHSKLFPAIAGRRMDYSSSDSSDDDDD 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12232g00004 712 MobiDBLite consensus disorder prediction 147 223 - -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 17 31 - -
Vium12232g00004 712 SUPERFAMILY Formin homology 2 domain (FH2 domain) 193 651 - -
Vium12232g00004 712 ProSiteProfiles Formin homology-2 (FH2) domain profile. 237 665 IPR015425 -
Vium12232g00004 712 PANTHER FORMIN-RELATED 15 702 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium12232g00004 712 MobiDBLite consensus disorder prediction 653 712 - -
Vium12232g00004 712 Gene3D Formin, FH2 domain 243 672 IPR042201 -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 129 246 - -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 1 36 - -
Vium12232g00004 712 Pfam Formin Homology 2 Domain 239 639 IPR015425 -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 653 686 - -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 495 519 - -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 1 16 - -
Vium12232g00004 712 SMART it6_source 237 655 IPR015425 -
Vium12232g00004 712 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12232g00004 Vium-Chr12232 23228 26830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12232g00004 226 700 FH2 protein (formin) Gene Family AT5G54650 61.954 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12232g00004 - - vum:124821202 925.235