Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1222g00020 ATGGAAGATCGGCGGAGAAAGCACGGGGGAGGGTCGTCGGAGAGGGAATCTAAGCATTTTCTGAAAGTCATACTTCCCTCTGCTATTCATGCTAACCAAATGAGAATTCCTGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATATGGTAAAGATGTTTTCTTTGGCAGCTCATGGCGAGAGTTTGTAAACTACTATTCTCTAGGGTATGGTTCCCACCTAATTTTCAGATATGTAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCTCCAAACTCGGGGCACTAATAAACCAAATTGGAAGAGGTCCAAGTTTGAGAATGAGCAGCACCACGGCCATGAAACAAAAAAGAAAAAGCGTATGGTGGGGAATGGAGTAGAAACTAAGGATGAAGATGATGTGAATTTAATACGTCCGAGTGAGACTAAAGGAAGGAAGAAAAAAGGTGATTTTTCTCATGGGAAACAAGTCAAAAGTGGATGCAGAGGAAATCACTCTTCTTGGAAGATAGGAAAGGATGTTGCTACTGCTAGTGATAGATCGATGCCAAGAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAACTGAATTTGCTTGCAAGTATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATAGTAATGGAGAGCAGTGGGATGTTTCTTGCTCATGTCATAGCCGTTGCAGAGCATTGATAATATCGAGGGGATGGGCTAAATTTATGAGGGACAACGATCTATCAGAAGGAGATCAATGTCTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATGTACTGTGCCTGGCGAAGCTTAA 927 0.4099 MEDRRRKHGGGSSERESKHFLKVILPSAIHANQMRIPEEFIKRFGDELSTVATITVPDGRVWKMRLKKYGKDVFFGSSWREFVNYYSLGYGSHLIFRYVGNSKFRVLIFDITAAEICYPLQTRGTNKPNWKRSKFENEQHHGHETKKKKRMVGNGVETKDEDDVNLIRPSETKGRKKKGDFSHGKQVKSGCRGNHSSWKIGKDVATASDRSMPRNPFVTCTIKSSRLYVSTEFACKYLKPGVGMMLQNSNGEQWDVSCSCHSRCRALIISRGWAKFMRDNDLSEGDQCLLELIKRDPIVLKCTVPGEA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1222g00020 308 CDD B3_DNA 18 110 IPR003340 GO:0003677
Vium1222g00020 308 Gene3D - 201 305 IPR015300 -
Vium1222g00020 308 ProSiteProfiles B3 DNA-binding domain profile. 244 308 IPR003340 GO:0003677
Vium1222g00020 308 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vium1222g00020 308 CDD B3_DNA 221 296 IPR003340 GO:0003677
Vium1222g00020 308 MobiDBLite consensus disorder prediction 129 155 - -
Vium1222g00020 308 SUPERFAMILY DNA-binding pseudobarrel domain 215 296 IPR015300 -
Vium1222g00020 308 SMART B3_2 20 112 IPR003340 GO:0003677
Vium1222g00020 308 SMART B3_2 217 305 IPR003340 GO:0003677
Vium1222g00020 308 MobiDBLite consensus disorder prediction 169 193 - -
Vium1222g00020 308 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Vium1222g00020 308 Pfam B3 DNA binding domain 222 296 IPR003340 GO:0003677
Vium1222g00020 308 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Vium1222g00020 308 PANTHER B3 DOMAIN-CONTAINING 12 295 - -
Vium1222g00020 308 Gene3D - 11 113 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1222g00020 Vium-Chr1222 237404 239194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1222g00020 20 304 B3 DNA Binding Superfamily AT3G18990 30.746 5.93e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1222g00020 B3 3.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1222g00020 - - vun:114183160 560.451