Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1222g00001 ATGGTTACCATCCAAAGTTCCGATGTTGTGGTGCCCTCCGAGATTACGCCAACTTCAATCTCCTCACTCTCCCTCTGCGACCAAATCAAGCTTCCCAACCACGGATCTCAGCTCTATATCTACTCCAACACACGCATCACCGATGATTCATCCTTCGCTTCTGCGATTCACACTCTCTCAACCTCTCTCAGCAAAACCCTCACTGTCTTCCACCCTTTAGCCGGTCGCTTGAGCCGGATCCACGGTGGCCGCCTCCAGCTTCTCTGCAACGCCAAAGGGGTGCTTCTCGTGGTAGCCACGTGCAACACTGAACTCAGTTTTGAAGATCTGTGTGAGTTCGCTCCCACCTACGCTGTCCCCAAGATCAACTACGATGTCCCGATTGAGGATGTTCCCTTGCTAGTGGCGCAGGTCACCAGGTTCCCGTGTGGTTTCATCACACTTGGAATTGCCATGTTTCGCGCTTTCCTTGACGGAACTTCACTTTCGAACTTCACTAGCTCCTGGGCCAAACTCGCCAGAGGGGAGAGTTTAGATTCCGGTTTGACTCCTTTGTTTGATCGATCGAAACTAGATTCGTTCAAACTGAATAAACCGCCGCGGTTTGAACATCCCGAGTTTCTGCCACCGCCCCTTTGGACAAAACGCGATGAGGTGATGCAACATGAACTGGGTACGGCCTTGATGGTACTCACAAAAGGGCAAGTTCAGAAACTGAAGAATAAAGCGAATGACTTTGGAAGTGGGCATGGTAAGGTTCCCGTACGAGGTTTTACCAGCTTTGAGGTCATAAGCGGTCACTTGTGGAGGTGCATGTGCAGGGTTCGTTATTTAGGTGATGCGTCTCAACCGACGAGGTTGAACACTTTGGTTAACTGTAGAAACCGTTTGAGGCCATCTCTTCCCACTGCATATTTTGGCAATGCAACATTTCCTACTGTGACAGAAACTTGTTCCTTTGATGACATTATGCAGAAACCTCTTGGCTATGCTGTGAGGAAAGTGAGCGAATCGATTGAGAGAATGCGTGATGAGTACGTTAGGTCTGCTCTTGATTATATAGAACGTGTGGAGGACATGGATTTGTTCAGGGACACGTTTTACAACTCTGCTGGGAAAGGTAGAGAAGACCCTAATGTGAATGTGGTTGGTTGGGCCAATTTTTCGTATTTTAAGACGGATTTTGGGTGGGGGAAACCTGTTATTTTGCTTCCCGGGAACATTAATTCTAATGCCAAGGCTTTCCTTTTGGACACTGCAAGTGGTGATGGCTTCGTTGTAGCTGTTTGTTTGCGGAGATCGTATGTAGATGCGTTGAAGAAGTTGTTCTTTGAGGATATAGAGAAGCATGCTTCTAAATTGTGA 1365 0.4791 MVTIQSSDVVVPSEITPTSISSLSLCDQIKLPNHGSQLYIYSNTRITDDSSFASAIHTLSTSLSKTLTVFHPLAGRLSRIHGGRLQLLCNAKGVLLVVATCNTELSFEDLCEFAPTYAVPKINYDVPIEDVPLLVAQVTRFPCGFITLGIAMFRAFLDGTSLSNFTSSWAKLARGESLDSGLTPLFDRSKLDSFKLNKPPRFEHPEFLPPPLWTKRDEVMQHELGTALMVLTKGQVQKLKNKANDFGSGHGKVPVRGFTSFEVISGHLWRCMCRVRYLGDASQPTRLNTLVNCRNRLRPSLPTAYFGNATFPTVTETCSFDDIMQKPLGYAVRKVSESIERMRDEYVRSALDYIERVEDMDLFRDTFYNSAGKGREDPNVNVVGWANFSYFKTDFGWGKPVILLPGNINSNAKAFLLDTASGDGFVVAVCLRRSYVDALKKLFFEDIEKHASKL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1222g00001 454 Gene3D - 1 209 IPR023213 -
Vium1222g00001 454 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 9 432 - -
Vium1222g00001 454 Gene3D - 214 446 IPR023213 -
Vium1222g00001 454 Pfam Transferase family 1 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1222g00001 Vium-Chr1222 26153 27770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1222g00001 2 445 Monolignol Biosynthesis Gene Families AT5G48930 33.626 1.85e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1222g00001 K13065 - gmx:100819383 633.639