Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12217g00001 ATGAACCAAAACTTAAGAAATCTTGAAGTTCAGGACAGAATTGGGTACAAACGATGGGCTCCCATTAGGGAACAGGTCGCCTTGTTAGAGGCACTTTTCGCATTTGGGATAAGAAACCCAAACCGAGAACAAGTTCATGAAATCGCGACCAGGCTTAAGGTTTACGGGGAAATCGGGGAATACAGTGTCTACTGTTGGTTCCAAAACTATGGATATCGTGAAAAACAGCGATGTCTGAAACGAAACACCGTCACCACCTCTTACTCTCCGATTCCCCTCCTGCCCCCTTTTATGGATGATCTTTCACGCACAACGCCATCGGTTCCAGATCGGGTGACGCTGGACCTTTTCCCGATTCCTCCCGTTCCTGAAAGAAAAGAGATCCCTCCCATCTTTCGGTTCCAGTTGAAGGCTCCTTCAGTTGAGCTTTCCCTACGACCGCCTTCAGATGATGATGATGATGAATAG 468 0.4744 MNQNLRNLEVQDRIGYKRWAPIREQVALLEALFAFGIRNPNREQVHEIATRLKVYGEIGEYSVYCWFQNYGYREKQRCLKRNTVTTSYSPIPLLPPFMDDLSRTTPSVPDRVTLDLFPIPPVPERKEIPPIFRFQLKAPSVELSLRPPSDDDDDE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12217g00001 155 Pfam Homeodomain 17 76 IPR001356 GO:0003677
Vium12217g00001 155 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
Vium12217g00001 155 ProSiteProfiles 'Homeobox' domain profile. 12 77 IPR001356 GO:0003677
Vium12217g00001 155 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 81 IPR044555 GO:0003700|GO:0099402
Vium12217g00001 155 Gene3D - 16 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12217g00001 Vium-Chr12217 3161 3734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12217g00001 15 108 Wox Gene Family AT1G46480 33.673 5.39e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium12217g00001 Homeodomain 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12217g00001 - - vum:124821198 309.686