Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12201g00002 ATGATCGGAATAATGGGTATCAGCAGCCATGCAAACCTGTTCTTTGTTTTGTTAATGCTGTGTTCTTATGTGTTGGACGTTGGTATTGCCACAGAAAGCATCACTTCATCACAATCCATCAAGGACTTAGAAACTCTAAGCTCCAAAGATGGTAACTTCACTTTCGGGTTCTTCACCCCTCCAAATTCCTCAGACCGATACGTTGGAATTTGGTGGAAGCCTCAATCCACAGTCGTATGGGTTGCTAACAGAAATCAATCACTGAATGATTCTTCAGGAGTTGTTACCTTTTCTGAAGATGGCAATCTTGTGGTGCTGAATGGACAGAATCATGTTATTTGGTCAACATCTGTGTCAAACATATCTACCAATACGAGTGCCCAGCTTTCAGACGGGGGGAAGCTAGAACTCACAGAAACCACAACGGGAAACAGCTTATGGGATAGTTTTCAGCAACCTTCAAATACATTACTGCCCCAAATGAAAGTTTCAAGCAATAGAACAGGTAGGGGAGTAGGACTTACATCATGGAAGAGCCCTTCTGATCCCTCTGTTGGGAGCTTCTCTGTGGGTGCTGTTGAACGCGGAAAAATCGTTGAAGTGTTTATCTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTGGTGGGATCTTTACAGGGGTAGACCTGATGGCTAGTGCATATCTAAACAGTTTTACGGTTGTAGATGGTGAAATCATTTACAACCCAGAAAGTGTATCTGAATTCGGAATCTTCGTTCTGAATTCTCAAGGCAGAGTTGAACAAAAATATTGGGATGATACGAAGCAAGAACTAGAAGTTTCGTGGACGAATAAAATATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTCGCAATCTGTGATGCACATGGCTCAGCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTTAGGAGCACATCTTTGCAGTGTGAAAGAGCCAAAGATCAAAACACAACTATAGATACAAATGAAGATCAATTTTTGGAACTGCAAAAGGTGAAAATTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCCGAAGCCAATGCTTGAAAAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTTTTGGAATGACAATCTACTAGACATCCAACAACTCTCAAATCGAGGACTTTATCTGTATGTTCGTGTAGATCCTTCTGAACTTGAACATGGGAAAAAGACAACAATTATCATTACAGTAACAGTGATAATAGGAATGGTGATCATTGTCACTTGTGCATGTGTAATATGGAGGAGGACTTCCGGTCGCCCAGCAATGAAAAGGGACAAGAAAGGTTTCTTATATTTCAAGAATGATGAACCATTAGAACAAACAGGCAACAAAGTATTTGAAGAACTTTCACGAGTTAAACTACAGGAGCTGCTCCTGTTTGATTTCGAAAAGCTTGCAACAGCCACAGACAATTTCCACCAGTCCAACAAACTTGGCCAGGGTGGTTTTGGTCCTGTGTACATGGGGAAACTGCAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGGCAAGGTCTAGAAGAATTCATGAACGAAGTAGTCGTGATTTCCAAGCTTCAGCACCGTAATCTTGTAAGACTTCTTGGATGCTGTATTGAAGGTGACGAAAAGATGCTACTATATGAATATATGCCAAACAAAAGTCTAGATGTGCTTATTTTTGATCCAACAAAACATAAACTCCTAGATTGGAGGAAGCGCTGCTGCATAATAGAAGGAATAGCTCGAGGGTTGCTTTATCTTCACAGAGACTCTAGACTAAAAATTATACACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGACGAACTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCATGCTAATACTAACAGGATTGTTGGAACATACGGTTACATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGCTTTTATGATGATGAGCATTCTCTTACCCTTATAGGATTTACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAGTTGATTCAGAAATATATGATCCTAATGATCATGAAGATATGTTAAGGCTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCTGACAGACCCACAATGGCTACAGTAGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAACGTGGTTAATTCAGAGCCGTCTGAAGAAAGTCAAAGAGTTTGTTCCGTGAATACAATTAGTATTACAGAAGTCTATGGTAGGTAG 2499 0.4054 MIGIMGISSHANLFFVLLMLCSYVLDVGIATESITSSQSIKDLETLSSKDGNFTFGFFTPPNSSDRYVGIWWKPQSTVVWVANRNQSLNDSSGVVTFSEDGNLVVLNGQNHVIWSTSVSNISTNTSAQLSDGGKLELTETTTGNSLWDSFQQPSNTLLPQMKVSSNRTGRGVGLTSWKSPSDPSVGSFSVGAVERGKIVEVFIWNETRPYWRSGPWSGGIFTGVDLMASAYLNSFTVVDGEIIYNPESVSEFGIFVLNSQGRVEQKYWDDTKQELEVSWTNKISDCDVYGVCGSFAICDAHGSAICSCLKGFEPNNKEEWDAQNWTSGCFRSTSLQCERAKDQNTTIDTNEDQFLELQKVKIPDFSEWSSAEPETCRSQCLKNCSCVAYSHDDGIGCMFWNDNLLDIQQLSNRGLYLYVRVDPSELEHGKKTTIIITVTVIIGMVIIVTCACVIWRRTSGRPAMKRDKKGFLYFKNDEPLEQTGNKVFEELSRVKLQELLLFDFEKLATATDNFHQSNKLGQGGFGPVYMGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGDEKMLLYEYMPNKSLDVLIFDPTKHKLLDWRKRCCIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDDELNPKISDFGMARIFGRTEDHANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNTSFYDDEHSLTLIGFTWAQWKEGNILSLVDSEIYDPNDHEDMLRLIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFIRVQNVVNSEPSEESQRVCSVNTISITEVYGR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12201g00002 832 CDD PAN_AP_plant 333 421 - -
Vium12201g00002 832 Pfam Protein tyrosine and serine/threonine kinase 515 785 IPR001245 GO:0004672|GO:0006468
Vium12201g00002 832 FunFam receptor-like serine/threonine-protein kinase SD1-8 486 589 - -
Vium12201g00002 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 183 IPR036426 -
Vium12201g00002 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 150 - -
Vium12201g00002 832 SMART serkin_6 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12201g00002 832 Pfam S-locus glycoprotein domain 211 315 IPR000858 GO:0048544
Vium12201g00002 832 ProSiteProfiles Protein kinase domain profile. 514 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12201g00002 832 Gene3D Phosphorylase Kinase; domain 1 487 589 - -
Vium12201g00002 832 CDD STKc_IRAK 520 786 - -
Vium12201g00002 832 SMART ntp_6 349 421 IPR003609 -
Vium12201g00002 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 793 - -
Vium12201g00002 832 Gene3D - 27 151 IPR036426 -
Vium12201g00002 832 ProSiteProfiles PAN/Apple domain profile. 337 422 IPR003609 -
Vium12201g00002 832 SMART blect_4 37 153 IPR001480 -
Vium12201g00002 832 Pfam PAN-like domain 349 407 IPR003609 -
Vium12201g00002 832 SUPERFAMILY Protein kinase-like (PK-like) 499 809 IPR011009 -
Vium12201g00002 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 776 - -
Vium12201g00002 832 CDD B_lectin 37 153 IPR001480 -
Vium12201g00002 832 Pfam D-mannose binding lectin 77 178 IPR001480 -
Vium12201g00002 832 ProSiteProfiles Bulb-type lectin domain profile. 31 150 IPR001480 -
Vium12201g00002 832 Gene3D Transferase(Phosphotransferase) domain 1 590 790 - -
Vium12201g00002 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vium12201g00002 832 PIRSF SRK 4 832 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12201g00002 Vium-Chr12201 16177 19570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12201g00002 500 832 Receptor kinase-like Gene Family AT4G11530 56.637 1.24e-122 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium12201g00002 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12201g00002 - - gmx:113002415 1181.78