Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1219g00006 ATGCGTGCACTGGCCAATGCTGCAATGCACTACCGATCGAACGTAAAAGAAAGCATCATGAAGGGGAAAATGGCAAACAAGAGAAAAAGATGGGAATGTGAAGGAGGGGAAAAGAAGAGTGAAGAAGGGAAGACAGAATGGGAAAAACTGAGGGAAGAAGCAGCTTCAATGGCTGCTGCTATTCTTGGAGCTAGAAGAGCTAACAAACGTTACATTGGGGTGAGACAAAGACCCTCAGGGCGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGACTTTGGTTAGGCACTTACGACAATGCTGAAGATGCTGCAAGAGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACAAACTTCTTTCCTTCCCAATCTTCTCCTTATGTTTCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCTTTCATAGACTCAAAGCTAGAAACTTTGAATCCTGTACTCGTTTTCCGAGTAACCACTATGATCAAGAAACCAAAGTAGAACCTCAACCTCAATCTCAGCCTCAACCAGAACCAGAACCTAAATTATATCTCCAAACAGAAGAACCCCACTACGAGAATTTTGTAGACATGGAAGTAAATGGGATTGTTGAAGAAAGTTATCATGGTGCTAGTTATAGTTCTTCTGCCATGACTACTTGTGACTATAGCTGTGGAACTAATGAAGACGATTGTAACCAGAAGGGTAGCGGGGAAGATTTCAGCTTCGTTTATAATTTTGCTGAGAATGTTTATGATGAAGAGAAGAAGATTGTGAGTGGTAAAGGAGAGTTTGAAGGTTGTGATTTTCAGTTTTTGGAGTCTGGTGGATCACTGAGTTACTCTTTTTGTCCGTTTGAGATAGCAGAAGAGATGGTGGGAGCGATAGAGGAAAACAAATATTACGATGTTGATGATTCAGCGTTAGGCAGAGAAACTTTTATGATGAAGGGTGTCTGA 975 0.4215 MRALANAAMHYRSNVKESIMKGKMANKRKRWECEGGEKKSEEGKTEWEKLREEAASMAAAILGARRANKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDNAEDAARAYDEAARLLRGANTRTNFFPSQSSPYVSALPPKIAKLLFHRLKARNFESCTRFPSNHYDQETKVEPQPQSQPQPEPEPKLYLQTEEPHYENFVDMEVNGIVEESYHGASYSSSAMTTCDYSCGTNEDDCNQKGSGEDFSFVYNFAENVYDEEKKIVSGKGEFEGCDFQFLESGGSLSYSFCPFEIAEEMVGAIEENKYYDVDDSALGRETFMMKGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1219g00006 324 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Vium1219g00006 324 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Vium1219g00006 324 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Vium1219g00006 324 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Vium1219g00006 324 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Vium1219g00006 324 CDD AP2 69 126 IPR001471 GO:0003700|GO:0006355
Vium1219g00006 324 FunFam ethylene-responsive transcription factor RAP2-11 69 128 - -
Vium1219g00006 324 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677
Vium1219g00006 324 Gene3D AP2/ERF domain 69 128 IPR036955 GO:0003700|GO:0006355
Vium1219g00006 324 MobiDBLite consensus disorder prediction 161 176 - -
Vium1219g00006 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 41 204 - -
Vium1219g00006 324 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1219g00006 Vium-Chr1219 86827 87842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1219g00006 66 146 AP2-EREBP Transcription Factor Family AT5G19790 64.634 7.32e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1219g00006 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1219g00006 K09286 - gmx:100793940 345.51