Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1218g00001 ATGTTGATCAGCAACGAAGTAGAGGATTTGTTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTAATGACATTTTTCAGTCCGGTCAGAAATGTGTTATTCCTGGAGTTATCAGCTTTGAACATGAATCTGCTAAAAACACATTTAAATCATTCTGCTCTAGTAACGAAAACTCAGTTGCATTGCATCCCTCGTCTTCTAGACTTACACACCCTGAAGAGGGGAACTTTATGGTAATTGAGCATTCTAAAGAGGCTGCTCCTGGATGTTTGCCAGAGAGTTTCATTTGTGAAGAACAGAATGACGAGGATGTGAATGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTCTAGTAGATCCGATTCAGAAAAAAAATTGAGTTTATCACGACTCTCAAAAGTAGCAGTTTCTAACCTGTCTAGTGCTAGTACAGGCTGTGATAGAGAACCAATTACATTCCGGTTGGTTGAATCATCCAAACATGGTGTGATATCTAGTTGTTATCTATTGAACCGTAACAATTTAAATAAACAGGCTGTTAAGGATGAGGTAGATGTTACAAACTTTAACACAGCAACAGCAGACGGGCATATTGCAAAAGAAGTGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCGAGCAGGCTTGTAGTTACTAGTCCATCAATCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAAGAAATGCCAGAATTGACTAATGTGGACATCTCAAATTCACCCTCAACGCTACAGGAAGAGGACCCTCGTACTATGCTGCAGTTTCAGATTGTTCAGTTGCTTACTATGGCAGGATGGACAATTGAGAAGCGTCAACGGCCGAGCAGGCGTTATCCAGAGTCAGTTTATAGGACTCCCAAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAAAGCAATTTAATGTGCAGAGATTATAAGGAGTGGATTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGATAAAACAAAGATGCAGTCAGAAGACCCTGCTGCAATGTTGGCTTATCGATGGTGGCTTTTGGATCCTTTTGTAGTGGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGGGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGGTGTCATGTGCTCCCATTGATTCAAGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAATGTAAATTCTGTTCGTCAAGCCAAAATTAGAAATTCTAGAAGTCTTCATAAGCAGAGTTCAGAAAACTATCAGGAAACAGATAATATTATTAATGGACATGAGCCAATGGACATGTCAGAAGAAAATAACACATCCAGTGTGAGCTATGGCCTGGTTCATTCTCATGACTCAAGGGCTATACAACAGTCTGAATGTAGTGAGGAAGAGGGTGGGAAAATTTTAGTAGATCCTGCATCTGGGAAAGATAGCACATATTCTGTTTTTAATCTTACTCTGAGAAAGAAAATGAGAAGGAAGTGCAAAAGGGTATCTGAAATTAGAATGAGTATGTCCTACCATGGTGACATGCTGGGCTCAACTGTCACTAACCAGGTGCAGTCACTAGATGGTGAATCATGTGGTTTGGAAGAGGTCAAGAATTATCTAATTGACAATTCTGGAAGGAAAAGAAGCTGCAGAAAGTTATCATCTGCCAGTGCAATTCAGAGAAATATCAGGAAAACAAACTGCTCCGTAACTGGAACGGATAGGTCTAACAGATGCCAAATTAAAGATGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCGGGCCAAAGGCAATCCGGGGAAATTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAACTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCTGTAATGGAGGGAAATACAATAAGGACTGTAATAGGTTTTATTTGGGTTCAAGGACAATATTGTCCTGGTTGATGGATAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATGCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATATGTATATGTTGTGGTAAGGTGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGAAGATAATGACAAAAATGATGATTCATGCGGGTTATGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGCAGCTTGTTTGTCCGCTCAGGAGATCCCAGATGGTGACTGGTATTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATCTGCAGGATTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTGAAAGATAGAGAAACAAGAGAAGGAGCAGCCTCAGACATTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTGTACACTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGACATCTCATGGACGCTTCTTAGATGCATTCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCGATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAAAAACAGGATGTGTTAGTATCTGTAGCATCTATCAGGGTGCATGGAACCACAGTTGCAGAGATGCCTCTAATTGCTACTTGCAGTCGGTTTCGTCGCCAGGGAATGTGCCGGCTCCTTGTGAGTGCTATCGAGGAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTGGTATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACATGATGATATTTCCCGGGACAGTGTTTCTTGAGAAACCGTTACACAGGAAGACGAAAACTGAAGTTGAAACAGGACTGTGTGATGAATCAACTCAAGCAACGGATGAATCCGTCAAGGTATGCATCAGTTCTGAAGGAATGACCATTACTGACTCATTTCTACCAGATGTTGCAAACATTACCACCAATCAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGACGGTAAAAATCAGTCAGACTATGAAGCTGGCAGTGATACCCTCAGAAAAGACAATACACAACCTGTTGACACTGCATTGGAAGCCAAAGAATCAACAGAAATAAGTAGTAGCTGTTTTACGGAAGAGATCATCCACTTAACAGTGTCAGGTGGCTCAGAGAAATCTATGGAAGAGAACAATGTGAGCGAACTGAGAACATGCAATAAAGTGGAAATGGAAAGTGATTCAGTACAGCAATCTAGTGAGACTTTTTGTGCAATCCAAGATGGTGCTGAACCAAGTATAAGGATTGTGGAGGACACGAATATCAAAATAGGGGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTTCAAAGTCTGCAAGCTGA 3945 0.4084 MLISNEVEDLFDDNFEGSNEERQIFSEVFSGNDIFQSGQKCVIPGVISFEHESAKNTFKSFCSSNENSVALHPSSSRLTHPEEGNFMVIEHSKEAAPGCLPESFICEEQNDEDVNVKRMKFSLHELASSRSDSEKKLSLSRLSKVAVSNLSSASTGCDREPITFRLVESSKHGVISSCYLLNRNNLNKQAVKDEVDVTNFNTATADGHIAKEVSVSKAAASPVSQESFASRLVVTSPSITVVKKSGSPLNPEEMPELTNVDISNSPSTLQEEDPRTMLQFQIVQLLTMAGWTIEKRQRPSRRYPESVYRTPKGKPIREFTKAWRICGELLSVEKSNLMCRDYKEWIDISQFWSDLSSALINVDKTKMQSEDPAAMLAYRWWLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKVSCAPIDSSSGNLNQVPGGSNVNSVRQAKIRNSRSLHKQSSENYQETDNIINGHEPMDMSEENNTSSVSYGLVHSHDSRAIQQSECSEEEGGKILVDPASGKDSTYSVFNLTLRKKMRRKCKRVSEIRMSMSYHGDMLGSTVTNQVQSLDGESCGLEEVKNYLIDNSGRKRSCRKLSSASAIQRNIRKTNCSVTGTDRSNRCQIKDDDLLVSAIFRNKDFGPKAIRGNSRAKSCKSRGQRKLKSQKGRCRLLPRNPCNGGKYNKDCNRFYLGSRTILSWLMDNGVISLNDVIQYRNAKDNVVIKDGRITKDGIICICCGKVLTLSEFKLHAGFTLNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVQAEDNDKNDDSCGLCGEGGELICCDNCPSTFHAACLSAQEIPDGDWYCANCTCRICGNLVIDKDTSDLQDLLQCSQCEHKYHETCLKDRETREGAASDIWFCGQSCQEVYTGLQSQVGLVNQVADDISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKQDVLVSVASIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSAIEEMLTSFKVERLVVSAIPDLVETWTKGFGFKPVDDVERKRLNKFNMMIFPGTVFLEKPLHRKTKTEVETGLCDESTQATDESVKVCISSEGMTITDSFLPDVANITTNQVEAKSEHEPVDGKNQSDYEAGSDTLRKDNTQPVDTALEAKESTEISSSCFTEEIIHLTVSGGSEKSMEENNVSELRTCNKVEMESDSVQQSSETFCAIQDGAEPSIRIVEDTNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFSKSAS 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1218g00001 1314 CDD PHD2_CHD_II 800 840 - -
Vium1218g00001 1314 SUPERFAMILY FYVE/PHD zinc finger 841 893 IPR011011 -
Vium1218g00001 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 900 IPR013083 -
Vium1218g00001 1314 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 950 1074 IPR016181 -
Vium1218g00001 1314 SUPERFAMILY FYVE/PHD zinc finger 786 841 IPR011011 -
Vium1218g00001 1314 PANTHER PHD FINGER FAMILY PROTEIN 1 1236 - -
Vium1218g00001 1314 CDD PHD_SF 841 891 - -
Vium1218g00001 1314 SMART PHD_3 842 896 IPR001965 -
Vium1218g00001 1314 SMART PHD_3 800 841 IPR001965 -
Vium1218g00001 1314 MobiDBLite consensus disorder prediction 257 271 - -
Vium1218g00001 1314 Pfam PHD-finger 801 842 IPR019787 -
Vium1218g00001 1314 MobiDBLite consensus disorder prediction 1151 1171 - -
Vium1218g00001 1314 MobiDBLite consensus disorder prediction 1148 1176 - -
Vium1218g00001 1314 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 951 1098 IPR000182 GO:0016747
Vium1218g00001 1314 ProSiteProfiles Zinc finger PHD-type profile. 798 843 IPR019787 -
Vium1218g00001 1314 Gene3D - 946 1085 - -
Vium1218g00001 1314 Pfam Tify domain binding domain 723 773 IPR032308 -
Vium1218g00001 1314 MobiDBLite consensus disorder prediction 244 271 - -
Vium1218g00001 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 842 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1218g00001 Vium-Chr1218 4786 20538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1218g00001 1 1159 PHD Transcription Factor Family AT3G14980 39.676 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium1218g00001 TDBD 9.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1218g00001 - - gmx:100777440 2169.81