Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12185g00001 ATGAGCGCAGAGGACGATGACTCAGAGGGAAAAAGATTGAAACTTCGGCAAGATGAGGTGTTCAATTGTGGTGTGAAGAATTTCCAGCGCGATCTGGTGGCTGGGGCGTTGATGGGCGGTGTGGTGCACACGATTGTTGCCCCAATTGAGAGGTCGAAGCTGTTGCTACAGACTCAGGAGAGCAATTTGGCCATTGTGGCGAGTGGGCGTCGCAGATTCAAGGGCATGTTTGATTGCATAGCCCGTACGGTCAGGGAAGAAGGCATTCTCTCTTTGTGGCGAGGTAATGGCAGCAGTGTTATTCGTTACTATCCTTCTGTGGCCCTCAATTTCTCTCTCAAG 342 0.5117 MSAEDDDSEGKRLKLRQDEVFNCGVKNFQRDLVAGALMGGVVHTIVAPIERSKLLLQTQESNLAIVASGRRRFKGMFDCIARTVREEGILSLWRGNGSSVIRYYPSVALNFSLK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12185g00001 114 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085
Vium12185g00001 114 PRINTS Mitochondrial carrier protein signature 95 114 IPR002067 GO:0055085
Vium12185g00001 114 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vium12185g00001 114 SUPERFAMILY Mitochondrial carrier 26 113 IPR023395 -
Vium12185g00001 114 Pfam Mitochondrial carrier protein 26 113 IPR018108 -
Vium12185g00001 114 PRINTS Adenine nucleotide translocator signature 73 94 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12185g00001 114 PRINTS Adenine nucleotide translocator signature 28 40 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12185g00001 114 PRINTS Adenine nucleotide translocator signature 106 114 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12185g00001 114 Gene3D Mitochondrial carrier domain 25 114 IPR023395 -
Vium12185g00001 114 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 114 IPR018108 -
Vium12185g00001 114 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 20 114 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12185g00001 Vium-Chr12185 1071 1412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12185g00001 24 114 Antiporters AT5G13490 48.387 1.32e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12185g00001 K05863 - vum:124821170 226.098