Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12175g00003 ATGGCAGATATTGCTTCAAATTCATGTATCAATATCTTATACCTTATCACCAAAAAACTTGCCATGAAGTTCTACTTCCCTCGAGTGCATCCTTTCCTTTTCATGGTTCTTATTCTCTGTCCTATGATTTTTGCTGACTTAAATTCTGATAAGCAAGCCCTTCTTGATTTTGCTGCTTCTGTCCCCCATCGCCGTGACCTAAAGTGGAATTCAGCTACTTCAATTTGTACATCTTGGGTAGGTGTCACTTGCAATCTAAATGGCACCCGTGTTGTTTCTCTCCGGCTTCCTGGAATTGGACTTGTCGGCACCATTCCGGCCAATACACTTGGCAAGATTGACTCACTCAGAAATCTCAGCCTCCGTGCCAACCTACTCAGTGGAAGTCTTCCTCCTGATATTTCTTCTCTTCCTTCTCTACAATATCTTTACCTTCAGCATAATAACCTTTCTGGTAACATACCTACCTCACTGTCCACCCACCTCAATGTACTTGATTTGTCATATAATTCCTTCACCGGTGCTATTCCAAAGACATTGCAAAACTTAACACAACTAACTAGGTTGAACCTCCAGAACAACTCCCTATCTGGTGAGATACCAAATCTCAATGTCACAAAGCTCAGGCACTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTGCTGCTCTTCAGACTTTCCCCAATTCTTCCTTTGAGGGTAACTCTCTATGTGGATTACCTCTAAGGCCATGCTCTGTAGCCCCCCCTGCATCTCCTCCATCATTAACTCCTGCCCCACCAACTCCTTCAAGACACAAAAGTAAATTGAGTAAGGCAGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGCTATTACTTTTAGTAGCTCTCATCATTGTTCTTTGCTGTTTAAAGAAAAAAGATGATGGAAGCCCCAGACCTACTAAAGGCAAGGGTCCTAGTGGTGGGAGAACTGACAAACCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAAGGCAGTTCTTATAATTTTGATCTAGAGGATTTGCTGAGAGCTTCGGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTAGAAGAGTCAACAACAGTTGTAGTGAAAAGGTTGAAGGAAGTCGTGGTTGGCAAAAGGGAATTTGAACAGCAGATGGAGATTGTGAGAAGAGTTGGACAGCACCCAAATGTTGTGCCACTTCGAGCTTACTATTATTCCAAGGATGAGAAGCTTTTGGTTTATGACTACATCCCAAATGGCAATCTATCAACCCTCTTGCATGGTAACAGAGCAAGTGGAAGAACTCCATTAGATTGGAACTCCCGAATAAAAATATCTGTTGGAATTGCCAGAGGAATTGCTCACGTACATTCAGTTGGCGGTCCAAAATTCACTCACGGAAATGTGAAATCTTCAAATGTCCTCCTCAACCAAGATAACGATGGCTGCATCTCTGACTTTGGCCTGACCCCATTAATGAATGTTCCTGCAACTCCTTCTAGAGCTGCAGGCTATCGCGCCCCTGAGGTGATTGAAACGCGTAAGCACTCTCACAAGTCAGATGTCTACAGTTTTGGTGTTCTCCTTCTGGAAATGCTGACCGGAAAAGCCCCGCAACAGTCTCCAGGACGTGACGATGTGGTCGATCTCCCAAGGTGGGTGCAATCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTTGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATATGAGGCCCACCATGGAGGAAGTAGTGAGAATGATTGAAGAAATCCGGCAATCCGACTCCGAAAACCGGCCATCTTCGGAAGAGAATAGATCCAAGGAGGAATCAACTGCTCAGACTCCATAA 1962 0.4399 MADIASNSCINILYLITKKLAMKFYFPRVHPFLFMVLILCPMIFADLNSDKQALLDFAASVPHRRDLKWNSATSICTSWVGVTCNLNGTRVVSLRLPGIGLVGTIPANTLGKIDSLRNLSLRANLLSGSLPPDISSLPSLQYLYLQHNNLSGNIPTSLSTHLNVLDLSYNSFTGAIPKTLQNLTQLTRLNLQNNSLSGEIPNLNVTKLRHLNLSYNHLNGSIPAALQTFPNSSFEGNSLCGLPLRPCSVAPPASPPSLTPAPPTPSRHKSKLSKAAIIAIAVGGGVLLLLVALIIVLCCLKKKDDGSPRPTKGKGPSGGRTDKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVRRVGQHPNVVPLRAYYYSKDEKLLVYDYIPNGNLSTLLHGNRASGRTPLDWNSRIKISVGIARGIAHVHSVGGPKFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPQQSPGRDDVVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVVRMIEEIRQSDSENRPSSEENRSKEESTAQTP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12175g00003 653 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Vium12175g00003 653 MobiDBLite consensus disorder prediction 305 332 - -
Vium12175g00003 653 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Vium12175g00003 653 SUPERFAMILY L domain-like 60 231 - -
Vium12175g00003 653 CDD STKc_IRAK 363 628 - -
Vium12175g00003 653 ProSiteProfiles Protein kinase domain profile. 357 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12175g00003 653 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Vium12175g00003 653 MobiDBLite consensus disorder prediction 626 647 - -
Vium12175g00003 653 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
Vium12175g00003 653 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515
Vium12175g00003 653 SUPERFAMILY Protein kinase-like (PK-like) 361 636 IPR011009 -
Vium12175g00003 653 FunFam pollen receptor-like kinase 1 325 432 - -
Vium12175g00003 653 Gene3D Transferase(Phosphotransferase) domain 1 433 652 - -
Vium12175g00003 653 Gene3D Phosphorylase Kinase; domain 1 325 432 - -
Vium12175g00003 653 PANTHER OS05G0588300 PROTEIN 33 640 - -
Vium12175g00003 653 MobiDBLite consensus disorder prediction 626 653 - -
Vium12175g00003 653 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12175g00003 653 Gene3D Ribonuclease Inhibitor 161 248 IPR032675 -
Vium12175g00003 653 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 433 640 - -
Vium12175g00003 653 Gene3D Ribonuclease Inhibitor 48 160 IPR032675 -
Vium12175g00003 653 FunFam Leucine-rich repeat receptor-like protein kinase 160 247 - -
Vium12175g00003 653 ProSitePatterns Protein kinases ATP-binding region signature. 363 394 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12175g00003 Vium-Chr12175 74635 79422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12175g00003 32 651 Receptor kinase-like Gene Family AT5G58300 70.476 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium12175g00003 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12175g00003 - - gmx:100776232 1041.95