Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12175g00002 ATGTCCGTACACTCAACACTGAACCTCCACCCCATCGACCCCGCCACTCCAAATTCCAATTTTGATGATAACCCACCATGCAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAATCACCGACCACGACGCCACTGATTCTGACTCCGACGACGAACAACGACAAAACAATCCAACAACGAGGAAAGTGAAGAGAGAAATTACCCAAATCAGCATGCACCTTCCTCTCCCGGACAACTCCCTTTCTTCTTGTTCGTATTCTTCTGGTTTAGCTTCTGCTTCCTCTTGTTCCTCCGAACAAGTCTCAAAGTGCAGAAGGCCCAAAAAACCTCCACCACCCTCCGAAGCGGCCCGCCGCCGCAGCAAGTTCCGCGGCGTCCGTCAGCGGCCGTGGGGTCGATGGGCCGCCGAGATCCGCGACCCGACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACAGAGTACGACAAAGCCGCCGTCAAACTCAAGGGTCCCAACGCCGTCACCAATTTCCCCCTCACAAGGCCGCCCCCGGTGGAGTCTCCTTTCGCCGCCATCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGACCTGGTGGCCTCGCCGACGTCCGTTTTGACCTACGACTGCGACTCGACGCCGTTCGACAGTTACCATTACGGCGACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGTCTGGCGGACGTTGACGTCTCGCTTACGTGTCATCCCTATAAGGAGGAGGAAGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAAGTGGCCTTACTAA 843 0.5765 MSVHSTLNLHPIDPATPNSNFDDNPPCKTKTKTQRRLLRIIITDHDATDSDSDDEQRQNNPTTRKVKREITQISMHLPLPDNSLSSCSYSSGLASASSCSSEQVSKCRRPKKPPPPSEAARRRSKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTRPPPVESPFAAIDSLSTDGGASYSDLVASPTSVLTYDCDSTPFDSYHYGDVDALGFHIDAPLSLADVDVSLTCHPYKEEEEAFDEFDLDEFMKWPY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12175g00002 280 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Vium12175g00002 280 MobiDBLite consensus disorder prediction 1 27 - -
Vium12175g00002 280 MobiDBLite consensus disorder prediction 105 124 - -
Vium12175g00002 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 191 - -
Vium12175g00002 280 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Vium12175g00002 280 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Vium12175g00002 280 PIRSF PTI6 8 280 IPR017392 GO:0003700
Vium12175g00002 280 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Vium12175g00002 280 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Vium12175g00002 280 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Vium12175g00002 280 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Vium12175g00002 280 MobiDBLite consensus disorder prediction 37 64 - -
Vium12175g00002 280 MobiDBLite consensus disorder prediction 99 127 - -
Vium12175g00002 280 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Vium12175g00002 280 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Vium12175g00002 280 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12175g00002 Vium-Chr12175 58715 60665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12175g00002 28 229 AP2-EREBP Transcription Factor Family AT4G27950 42.584 3.43e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium12175g00002 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12175g00002 K13434 - gmx:100817278 369.777