Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12170g00011 ATGTTGGTTTTGCAGGTTTTGGAGTTGGAGAGTGCTATGAATTTGGGTGTGGAAATGTTCGGGACGAGTAGAAGGCACAGGAGCGGTGGGCCTGTGGGACCCGTTTTGATTTCGAAGCGTTTTGTTTGGCCTCACGGTGGAAGAATGGTGTTTCTAACAGGTTCCTTCACGAGATGGACAACAGTTATACCTATGTCACCCAGGGAAGGATGTCCAACTGAATTTCAAGTTATTTGCGGCTTAACGCCTGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAGCATCAGCCATTTGTATGTGGGGACGGTGGGACAGTGAACACTTTTTATTTAGTGAGACAACCAGTTATTTTGCCTCCTATCGTAAATGCTGAAACACCTGGTCGATCCTACATGGAGGTTGACAATGATGTCGTTGGGCATGTGGAAGCTAAACCGAGGATGTCAGAGTCTGATCTGCAGGTCTCACGACATCGTATTTCGGTTTTCTTGTCTTCACATACGGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGGAATATCGTCAGCTCCTGTGTGGGATTCTAGTAAGTGCCAGTTTGTTGGAATGCTTAGTGCTATGGACTTCATTTTAATACTAAAACAGTTGGGGATTCATGGATCAAACATGACTGAAGAACAACTGGAAACACGTACTATAGCAGCATGGAGAGAGGCAAAGGAACAAGAATGCGCAATTGATAGTAAAGGGAGAGCATACCCTCAACATTTAGTTCATGCTGGGCCCCTTGAGAGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAGACAAGGTGGCAACAGTTCCTATTATTCAGTCTTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGCATTTTAAGCACTGTTCGGATTCCTTGCCCATTCTTCAGCTACCAATTAGTACGTTACCTATAGGTGCATGGGTGTCAAAATTGGGGGAATCCAATAAACAGCCACTTGCTATGCTATGGCCACATGCTTCTCTTGGCGAAGCTCTATCTCTGTTGATTCAAGCTGGAATTAGCTCAATACCAATTGTGGATATTAATTATTCATTACAAGATATGTATTCAAGAAGAGATATTATTGCGTTGGCTAGAGATAAAATGTATGCAAGGATAGATCTGGATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGAGATGCAGGTTTTCCTTGCGGGCTGCGCAATGGGCCGAGATGTCATATGTGTTTGAGATCTGACTCATTACACAAAGTGATGGAGCGCTTGACAAAACCTGGTGTTAGAAGACTTGTGGTTGTGGAGGCGGGTACCAGACGTGTGGAAGGTATCATTTCTATTAGTGACATATTCAGATTATTGTTATGCTGCTAG 1440 0.4354 MLVLQVLELESAMNLGVEMFGTSRRHRSGGPVGPVLISKRFVWPHGGRMVFLTGSFTRWTTVIPMSPREGCPTEFQVICGLTPGYHQYKFNVDGEWRHDEHQPFVCGDGGTVNTFYLVRQPVILPPIVNAETPGRSYMEVDNDVVGHVEAKPRMSESDLQVSRHRISVFLSSHTAYELLPESGKGISSAPVWDSSKCQFVGMLSAMDFILILKQLGIHGSNMTEEQLETRTIAAWREAKEQECAIDSKGRAYPQHLVHAGPLESLKDVALKILQDKVATVPIIQSSSEDGSFPQLLHLASLSEILKCICRHFKHCSDSLPILQLPISTLPIGAWVSKLGESNKQPLAMLWPHASLGEALSLLIQAGISSIPIVDINYSLQDMYSRRDIIALARDKMYARIDLDGFSIHQALLLGRDAGFPCGLRNGPRCHMCLRSDSLHKVMERLTKPGVRRLVVVEAGTRRVEGIISISDIFRLLLCC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12170g00011 479 Gene3D Immunoglobulins 35 119 IPR013783 -
Vium12170g00011 479 Pfam Glycogen recognition site of AMP-activated protein kinase 39 120 IPR032640 -
Vium12170g00011 479 SUPERFAMILY CBS-domain pair 344 476 IPR046342 -
Vium12170g00011 479 Pfam CBS domain 345 390 IPR000644 -
Vium12170g00011 479 Pfam CBS domain 429 476 IPR000644 -
Vium12170g00011 479 Gene3D - 324 479 IPR046342 -
Vium12170g00011 479 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 174 476 - -
Vium12170g00011 479 FunFam Sucrose nonfermenting 4-like protein 34 119 - -
Vium12170g00011 479 Gene3D - 155 319 IPR046342 -
Vium12170g00011 479 SUPERFAMILY CBS-domain pair 164 315 IPR046342 -
Vium12170g00011 479 ProSiteProfiles CBS domain profile. 341 402 IPR000644 -
Vium12170g00011 479 SMART cbs_1 428 477 IPR000644 -
Vium12170g00011 479 SMART cbs_1 158 213 IPR000644 -
Vium12170g00011 479 SMART cbs_1 345 393 IPR000644 -
Vium12170g00011 479 SUPERFAMILY E set domains 40 118 IPR014756 -
Vium12170g00011 479 ProSiteProfiles CBS domain profile. 425 479 IPR000644 -
Vium12170g00011 479 CDD E_set_AMPKbeta_like_N 40 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12170g00011 Vium-Chr12170 24954 41819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12170g00011 41 128 Protein tyrosine phosphatase (PTP) family AT3G01510 32.222 6.56e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12170g00011 - - gmx:100790062 771.155