Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vium12170g00011
ATGTTGGTTTTGCAGGTTTTGGAGTTGGAGAGTGCTATGAATTTGGGTGTGGAAATGTTCGGGACGAGTAGAAGGCACAGGAGCGGTGGGCCTGTGGGACCCGTTTTGATTTCGAAGCGTTTTGTTTGGCCTCACGGTGGAAGAATGGTGTTTCTAACAGGTTCCTTCACGAGATGGACAACAGTTATACCTATGTCACCCAGGGAAGGATGTCCAACTGAATTTCAAGTTATTTGCGGCTTAACGCCTGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAGCATCAGCCATTTGTATGTGGGGACGGTGGGACAGTGAACACTTTTTATTTAGTGAGACAACCAGTTATTTTGCCTCCTATCGTAAATGCTGAAACACCTGGTCGATCCTACATGGAGGTTGACAATGATGTCGTTGGGCATGTGGAAGCTAAACCGAGGATGTCAGAGTCTGATCTGCAGGTCTCACGACATCGTATTTCGGTTTTCTTGTCTTCACATACGGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGGAATATCGTCAGCTCCTGTGTGGGATTCTAGTAAGTGCCAGTTTGTTGGAATGCTTAGTGCTATGGACTTCATTTTAATACTAAAACAGTTGGGGATTCATGGATCAAACATGACTGAAGAACAACTGGAAACACGTACTATAGCAGCATGGAGAGAGGCAAAGGAACAAGAATGCGCAATTGATAGTAAAGGGAGAGCATACCCTCAACATTTAGTTCATGCTGGGCCCCTTGAGAGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAGACAAGGTGGCAACAGTTCCTATTATTCAGTCTTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGCATTTTAAGCACTGTTCGGATTCCTTGCCCATTCTTCAGCTACCAATTAGTACGTTACCTATAGGTGCATGGGTGTCAAAATTGGGGGAATCCAATAAACAGCCACTTGCTATGCTATGGCCACATGCTTCTCTTGGCGAAGCTCTATCTCTGTTGATTCAAGCTGGAATTAGCTCAATACCAATTGTGGATATTAATTATTCATTACAAGATATGTATTCAAGAAGAGATATTATTGCGTTGGCTAGAGATAAAATGTATGCAAGGATAGATCTGGATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGAGATGCAGGTTTTCCTTGCGGGCTGCGCAATGGGCCGAGATGTCATATGTGTTTGAGATCTGACTCATTACACAAAGTGATGGAGCGCTTGACAAAACCTGGTGTTAGAAGACTTGTGGTTGTGGAGGCGGGTACCAGACGTGTGGAAGGTATCATTTCTATTAGTGACATATTCAGATTATTGTTATGCTGCTAG
1440
0.4354
MLVLQVLELESAMNLGVEMFGTSRRHRSGGPVGPVLISKRFVWPHGGRMVFLTGSFTRWTTVIPMSPREGCPTEFQVICGLTPGYHQYKFNVDGEWRHDEHQPFVCGDGGTVNTFYLVRQPVILPPIVNAETPGRSYMEVDNDVVGHVEAKPRMSESDLQVSRHRISVFLSSHTAYELLPESGKGISSAPVWDSSKCQFVGMLSAMDFILILKQLGIHGSNMTEEQLETRTIAAWREAKEQECAIDSKGRAYPQHLVHAGPLESLKDVALKILQDKVATVPIIQSSSEDGSFPQLLHLASLSEILKCICRHFKHCSDSLPILQLPISTLPIGAWVSKLGESNKQPLAMLWPHASLGEALSLLIQAGISSIPIVDINYSLQDMYSRRDIIALARDKMYARIDLDGFSIHQALLLGRDAGFPCGLRNGPRCHMCLRSDSLHKVMERLTKPGVRRLVVVEAGTRRVEGIISISDIFRLLLCC
479
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vium12170g00011
479
Gene3D
Immunoglobulins
35
119
IPR013783
-
Vium12170g00011
479
Pfam
Glycogen recognition site of AMP-activated protein kinase
39
120
IPR032640
-
Vium12170g00011
479
SUPERFAMILY
CBS-domain pair
344
476
IPR046342
-
Vium12170g00011
479
Pfam
CBS domain
345
390
IPR000644
-
Vium12170g00011
479
Pfam
CBS domain
429
476
IPR000644
-
Vium12170g00011
479
Gene3D
-
324
479
IPR046342
-
Vium12170g00011
479
PANTHER
AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT
174
476
-
-
Vium12170g00011
479
FunFam
Sucrose nonfermenting 4-like protein
34
119
-
-
Vium12170g00011
479
Gene3D
-
155
319
IPR046342
-
Vium12170g00011
479
SUPERFAMILY
CBS-domain pair
164
315
IPR046342
-
Showing 1 to 10 of 17 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Vium12170g00011
Vium-Chr12170
24954
41819
Dispersed/Tandem
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vium12170g00011
41
128
Protein tyrosine phosphatase (PTP) family
AT3G01510
32.222
6.56e-06
46.6
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vium12170g00011
-
-
gmx:100790062
771.155
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
