Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12170g00010 ATGAATTTGGGTGTGGAAATGTTCGGGACGAGTAGAAGGCACAGGAGCGGTGGGCCTGTGGGACCCGTTTTGATTTCGAAGCGTTTTGTTTGGCCTCACGGTGGAAGAATGGTGTTTCTAACAGGTTCCTTCACGAGATGGACAACAGTTATACCTATGTCACCCAGGGAAGGATGTCCAACTGAATTTCAAGTTATTTGCGGCTTAACGCCTGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAGCATCAGCCATTTGTATGTGGGGACGGTGGGACAGTGAACACTTTTTATTTAGTGAGACAACCAGTTATTTTGCCTCCTATCGTAAATGCTGAAACACCTGGTCGATCCTACATGGAGGTTGACAATGATGTCGTTGGGCATGTGGAAGCTAAACCGAGGATGTCAGAGTCTGATCTGCAGGTCTCACGACATCGTATTTCGGTTTTCTTGTCTTCACATACGGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGATATAACTTTACCAGTTAAGCAAGCATTCCATGCTCTTTATCAAGAAGGAATATCGTCAGCTCCTGTGTGGGATTCTAGTAAGTGCCAGTTTGTTGGAATGCTTAGTGCTATGGACTTCATTTTAATACTAAAACAGTTGGGGATTCATGGATCAAACATGACTGAAGAACAACTGGAAACACGTACTATAGCAGCATGGAGAGAGGCAAAGGAACAAGAATGCGCAATTGATAGTAAAGGGAGAGCATACCCTCAACATTTAGTTCATGCTGGGCCCCTTGAGAGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAGACAAGGTGGCAACAGTTCCTATTATTCAGTCTTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGCATTTTAAGCACTGTTCGGATTCCTTGCCCATTCTTCAGCTACCAATTAGTACGTTACCTATAGGTGCATGGGTGTCAAAATTGGGGGAATCCAATAAACAGCCACTTGCTATGCTATGGCCACATGCTTCTCTTGGCGAAGCTCTATCTCTGTTGATTCAAGCTGGAATTAGCTCAATACCAATTGTGGATATTAATTATTCATTACAAGATATGTATTCAAGAAGAGATATTATTGCGTTGGCTAGAGATAAAATGTATGCAAGGATAGATCTGGATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGAGATGCAGGTTTTCCTTGCGGGCTGCGCAATGGGCCGAGATGTCATATGTGTTTGAGATCTGACTCATTACACAAAGTGATGGAGCGCTTGACAAAACCTGGTGTTAGAAGACTTGTGGTTGTGGAGGCGGGTACCAGACGTGTGGAAGGTATCATTTCTATTAGTGACATATTCAGATTATTGTTATGCTGCTAG 1464 0.4324 MNLGVEMFGTSRRHRSGGPVGPVLISKRFVWPHGGRMVFLTGSFTRWTTVIPMSPREGCPTEFQVICGLTPGYHQYKFNVDGEWRHDEHQPFVCGDGGTVNTFYLVRQPVILPPIVNAETPGRSYMEVDNDVVGHVEAKPRMSESDLQVSRHRISVFLSSHTAYELLPESGKVVALDITLPVKQAFHALYQEGISSAPVWDSSKCQFVGMLSAMDFILILKQLGIHGSNMTEEQLETRTIAAWREAKEQECAIDSKGRAYPQHLVHAGPLESLKDVALKILQDKVATVPIIQSSSEDGSFPQLLHLASLSEILKCICRHFKHCSDSLPILQLPISTLPIGAWVSKLGESNKQPLAMLWPHASLGEALSLLIQAGISSIPIVDINYSLQDMYSRRDIIALARDKMYARIDLDGFSIHQALLLGRDAGFPCGLRNGPRCHMCLRSDSLHKVMERLTKPGVRRLVVVEAGTRRVEGIISISDIFRLLLCC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12170g00010 487 ProSiteProfiles CBS domain profile. 433 487 IPR000644 -
Vium12170g00010 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 143 484 - -
Vium12170g00010 487 Pfam Glycogen recognition site of AMP-activated protein kinase 27 108 IPR032640 -
Vium12170g00010 487 Pfam CBS domain 353 398 IPR000644 -
Vium12170g00010 487 Pfam CBS domain 437 484 IPR000644 -
Vium12170g00010 487 ProSiteProfiles CBS domain profile. 166 228 IPR000644 -
Vium12170g00010 487 SMART cbs_1 353 401 IPR000644 -
Vium12170g00010 487 SMART cbs_1 172 221 IPR000644 -
Vium12170g00010 487 SMART cbs_1 436 485 IPR000644 -
Vium12170g00010 487 Gene3D - 143 327 IPR046342 -
Vium12170g00010 487 Gene3D - 332 487 IPR046342 -
Vium12170g00010 487 Gene3D Immunoglobulins 23 107 IPR013783 -
Vium12170g00010 487 FunFam Sucrose nonfermenting 4-like protein 22 107 - -
Vium12170g00010 487 CDD E_set_AMPKbeta_like_N 28 101 - -
Vium12170g00010 487 SUPERFAMILY CBS-domain pair 352 484 IPR046342 -
Vium12170g00010 487 SUPERFAMILY CBS-domain pair 152 323 IPR046342 -
Vium12170g00010 487 ProSiteProfiles CBS domain profile. 349 410 IPR000644 -
Vium12170g00010 487 SUPERFAMILY E set domains 28 106 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12170g00010 Vium-Chr12170 24954 41819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12170g00010 29 116 Protein tyrosine phosphatase (PTP) family AT3G01510 32.222 6.49e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12170g00010 - - gmx:100790062 821.231