Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12170g00008 ATGTTGGTTTTGCAGGTTTTGGAGTTGGAGAGTGCTATGAATTTGGGTGTGGAAATGTTCGGGACGAGTAGAAGGCACAGGAGCGGTGGGCCTGTGGGACCCGTTTTGATTTCGAAGCGTTTTGTTTGGCCTCACGGTGGAAGAATGGTGTTTCTAACAGGTTCCTTCACGAGATGGACAACAGTTATACCTATGTCACCCAGGGAAGGATGTCCAACTGAATTTCAAGTTATTTGCGGCTTAACGCCTGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAGCATCAGCCATTTGTATGTGGGGACGGTGGGACAGTGAACACTTTTTATTTAGTGAGACAACCAGTTATTTTGCCTCCTATCGTAAATGCTGAAACACCTGGTCGATCCTACATGGAGGTTGACAATGATGTCGTTGGGCATGTGGAAGCTAAACCGAGGATGTCAGAGTCTGATCTGCAGGTCTCACGACATCGTATTTCGGTTTTCTTGTCTTCACATACGGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGATATAACTTTACCAGTTAAGCAAGCATTCCATGCTCTTTATCAAGAAGGAATATCGTCAGCTCCTGTGTGGGATTCTAGTAAGTGCCAGTTTGTTGGAATGCTTAGTGCTATGGACTTCATTTTAATACTAAAACAGTTGGGGATTCATGGATCAAACATGACTGAAGAACAACTGGAAACACGTACTATAGCAGCATGGAGAGAGGCAAAGGAACAAGAATGCGCAATTGATAGTAAAGGGAGAGCATACCCTCAACATTTAGTTCATGCTGGGCCCCTTGAGAGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAGACAAGGTGGCAACAGTTCCTATTATTCAGTCTTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGCATTTTAAGCACTGTTCGGATTCCTTGCCCATTCTTCAGCTACCAATTAGTACGTTACCTATAGGTGCATGGGTGTCAAAATTGGGGGAATCCAATAAACAGCCACTTGCTATGCTATGGCCACATGCTTCTCTTGGCGAAGCTCTATCTCTGTTGATTCAAGCTGGAATTAGCTCAATACCAATTGTGGATATTAATTATTCATTACAAGATATGTATTCAAGAAGAGATATTATTGCGTTGGCTAGAGATAAAATGTATGCAAGGATAGATCTGGATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGAGATGCAGGTTTTCCTTGCGGGCTGCGCAATGGGCCGAGATGTCATATGTGTTTGAGATCTGACTCATTACACAAAGTGATGGAGCGCTTGACAAAACCTGGTGTTAGAAGACTTGTGGTTGTGGAGGCGGGTACCAGACGTGTGGAAGGTATCATTTCTATTAGTGACATATTCAGATTATTGTTATGCTGCTAG 1500 0.4327 MLVLQVLELESAMNLGVEMFGTSRRHRSGGPVGPVLISKRFVWPHGGRMVFLTGSFTRWTTVIPMSPREGCPTEFQVICGLTPGYHQYKFNVDGEWRHDEHQPFVCGDGGTVNTFYLVRQPVILPPIVNAETPGRSYMEVDNDVVGHVEAKPRMSESDLQVSRHRISVFLSSHTAYELLPESGKVVALDITLPVKQAFHALYQEGISSAPVWDSSKCQFVGMLSAMDFILILKQLGIHGSNMTEEQLETRTIAAWREAKEQECAIDSKGRAYPQHLVHAGPLESLKDVALKILQDKVATVPIIQSSSEDGSFPQLLHLASLSEILKCICRHFKHCSDSLPILQLPISTLPIGAWVSKLGESNKQPLAMLWPHASLGEALSLLIQAGISSIPIVDINYSLQDMYSRRDIIALARDKMYARIDLDGFSIHQALLLGRDAGFPCGLRNGPRCHMCLRSDSLHKVMERLTKPGVRRLVVVEAGTRRVEGIISISDIFRLLLCC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12170g00008 499 Gene3D - 155 339 IPR046342 -
Vium12170g00008 499 Gene3D - 344 499 IPR046342 -
Vium12170g00008 499 ProSiteProfiles CBS domain profile. 178 240 IPR000644 -
Vium12170g00008 499 ProSiteProfiles CBS domain profile. 361 422 IPR000644 -
Vium12170g00008 499 SUPERFAMILY CBS-domain pair 164 335 IPR046342 -
Vium12170g00008 499 SMART cbs_1 365 413 IPR000644 -
Vium12170g00008 499 SMART cbs_1 448 497 IPR000644 -
Vium12170g00008 499 SMART cbs_1 184 233 IPR000644 -
Vium12170g00008 499 Pfam Glycogen recognition site of AMP-activated protein kinase 39 120 IPR032640 -
Vium12170g00008 499 SUPERFAMILY CBS-domain pair 364 496 IPR046342 -
Vium12170g00008 499 ProSiteProfiles CBS domain profile. 445 499 IPR000644 -
Vium12170g00008 499 SUPERFAMILY E set domains 40 118 IPR014756 -
Vium12170g00008 499 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 155 496 - -
Vium12170g00008 499 Pfam CBS domain 449 496 IPR000644 -
Vium12170g00008 499 Pfam CBS domain 365 410 IPR000644 -
Vium12170g00008 499 CDD E_set_AMPKbeta_like_N 40 113 - -
Vium12170g00008 499 FunFam Sucrose nonfermenting 4-like protein 34 119 - -
Vium12170g00008 499 Gene3D Immunoglobulins 35 119 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12170g00008 Vium-Chr12170 24954 41820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12170g00008 41 128 Protein tyrosine phosphatase (PTP) family AT3G01510 32.222 6.62e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12170g00008 - - gmx:100790062 821.231