Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12170g00007 ATGAGAGGGGGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTTAATAAGCGGATTTCAAGTACAAATGATTCTCCTGAGAAAGATGGAGTTAATCCAAATAAAAACAAGCAACGGAAGAAAAAGTTGACTGATAAACTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGATTTTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTGGTGTTGTACGAAATAGAACCACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATACCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGTTGGAAGAGAGTGACAGTGAAATGGAGAGCAATGATGCACTAGGATCTCGGAAATTTGTAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTGACAGTGATGGTTGCCTCTATTTACTGAAGAAGAGACGCTTAGATGGTATGGTGCCTCATGCTGTTGGTAAACGGACTCCTCGTGTTCCAGTTTCTTATTCTTATAAGAAAGAGTATACAGAAAATTATGTTTCACCTTATAGAAGAAGCCTAAAGTCAACTACTGATGCTAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCCTTAACTGAGGCTGCACAAAGAGGAGGGTCTCCCCAAGTTTCTCAATCACCATGTAGAAGAGCAGATAAAAAACCCTCACCTGTCCTGCGTTGGGAAAGAAAGCAACTGTCAGAGACAGCTCGTGCCAAGTTACACAATCTTTCAGTGGATGAAGAGTTACTAGACGGTAGTATAGAAAGCAGGGGAGCTGACAATGGAGAATATGCAAGAGATAATAGTTCATTGATTGATATGGAAGGCACAGGAACAGTTGAGGTTCTTCAAAAGGGGGGGAAATTTTACAGAAAGAAAGAGAGAGTGAAAAACGTTGGAAACCATCAGCTTGATGATGGAGGGGAAGCATGTAGTGGCACTGAAGAAGGGCTTAGTTGCTCACTGAAGGAAATGGTTGATATTGAGGTTACTAATGAAAAGCTTGAAAAATTCTCTCCAAAAGGTGGGAGGAAACGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTGGCAGACCTGTCTCTAATGATGCCAATATCTACAGTAGATTCTGAATCATCTATCCAATTGAAGGGAGACAGGATTTCTGCTGATAAAGATGGTAAGTCTGCGCTACCTGAAGCAACACTAACAAGCCATAAGAGACATAAACTTAAACACAGCGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCCAAGCTTGGAAAGGAATCGACAAAGGATACGAACGTGCTTTCTGAATCAAAAGAACAACTTCCTATTGCTGATGCAACATGGAAAAGAAAGCGGAAGTCTGTGGTTTCCAAGGTTGCAAATGCAAAGCTTGATTCTTGTCCAAGTGGTCCCTTGAAAGATGAGGCTTTAGATGATGAGAAAAAACCAGTAGTTAAAGGAAAACATGGTGATCAGGTTTTTACCCTACCAAAGCAATTGAAGACCGTTAAATCATCAGAGAGTTCCTTGTGTATTGATCAGAAAGAGACAGGACCAATGGCGGAAATTCCACTTTTGAACGAAGTTAGTTTACCAACTAAACGAAGTAGACGGAAGATGAATTTACAGAGAACTTTCTCTGCTAAGGAAAAGTCTTCTGAATCCATATTGAAAAGTCAAGCTAACAAGCACTCTGATTTAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTTGTAAGAGGCTCCCTTGGCAAACCTCGGCGGCTTTCTGAACATTTTCTTCGTGATGAAAGGCAAAAACTTGCAGAGTATCGGGAATCAGTGAGAAAGCATTATGCTGAACTGCGAACTGGCATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGGCAGAGAGTAATTGCTATTCATCCGAAAACAAGAGAGATTCATGATGGTAGCGTGCTTACCGTTGATTATGATAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAGTTTGTCATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAGAAGCTCTGAGGAGGCATATTGATGACAGAAAAGGATCTTTTATGCCTATAGAGCCACATATTAATGGAAATTCACATTTTGGGGGGTGCGAAAATCATTCCTCACCTTTGAAGGTACATACTTCATCAAGTGCTTTAGTAATGCATGGAAAGGCTACGGTTGCTACCATGGATAACTTGTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTAACACACCATCAAGCTAGGGAAGCTGACATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACATTGTTGATAGAGCTTCGAAGTTCAAATAGCGATATATTGGAAAACCAAAATGGCATAGAATGCTTGAACGATTCTGAGGTTTTCAAGAAGCATTATGCCACGGTACTGGTAGAGCTAAAGGAAGCCAGTGGGCAGGTTTCTGATGCAATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCACAAACAGGTTTTAGTGTTCATGACGATCTTCCCAGTATGTTGGATGGTTCTCTTACACAAGAGTTTGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGGTCAAGGGCACATGCAATGGTAGATGCTGCATTTAAGGCATTGACTTTGACAAAGGAAGGTGAAGATGGTTTCGTGAAGATTGGGCAAGCTTTGGATTCTATTAATCATCAGCAGTTGGCCTCCAAGTCTAGGTTACCTGTGATCAGGTCTCAAGAGCAAGTGAACGCAAATGGCAGTTTTTATCATGTTAATAATTCAACTTGCAGTGTATCAGAGTCTATAATTAACGATCCATCTGGTGCAAAACTACATAATTATTCTGAGAAATTTGATACTGAACTTCCGTCAGATCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCAGTTAGCAGCCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACACAGATTTTAGCTTTGATCCCTACTTGA 3423 0.4084 MRGGSMAPTRKSRSVNKRISSTNDSPEKDGVNPNKNKQRKKKLTDKLGSQWSKEELERFYEAYRMYGKDWKKVAGVVRNRTTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEMESNDALGSRKFVKRKREKVQLSVSKDQSHSIADSDGCLYLLKKRRLDGMVPHAVGKRTPRVPVSYSYKKEYTENYVSPYRRSLKSTTDANDDEVAHVVALALTEAAQRGGSPQVSQSPCRRADKKPSPVLRWERKQLSETARAKLHNLSVDEELLDGSIESRGADNGEYARDNSSLIDMEGTGTVEVLQKGGKFYRKKERVKNVGNHQLDDGGEACSGTEEGLSCSLKEMVDIEVTNEKLEKFSPKGGRKRNKKLFFGDETPALNALQTLADLSLMMPISTVDSESSIQLKGDRISADKDGKSALPEATLTSHKRHKLKHSVVPEIEVSTSKKSKLGKESTKDTNVLSESKEQLPIADATWKRKRKSVVSKVANAKLDSCPSGPLKDEALDDEKKPVVKGKHGDQVFTLPKQLKTVKSSESSLCIDQKETGPMAEIPLLNEVSLPTKRSRRKMNLQRTFSAKEKSSESILKSQANKHSDLKEKLSSCLSSNMVRRWFIFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLRDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPEALRRHIDDRKGSFMPIEPHINGNSHFGGCENHSSPLKVHTSSSALVMHGKATVATMDNLCAQAGCVQPCKVTHHQAREADIHALSELKRALDKKETLLIELRSSNSDILENQNGIECLNDSEVFKKHYATVLVELKEASGQVSDAMLQLRQRNTYRGNSLPPWMKPQTGFSVHDDLPSMLDGSLTQEFGSTVVQIIKGSRSRAHAMVDAAFKALTLTKEGEDGFVKIGQALDSINHQQLASKSRLPVIRSQEQVNANGSFYHVNNSTCSVSESIINDPSGAKLHNYSEKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12170g00007 1140 Pfam Myb-like DNA-binding domain 49 86 IPR001005 -
Vium12170g00007 1140 Coils Coil 680 700 - -
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 1 47 - -
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 457 472 - -
Vium12170g00007 1140 PANTHER LIN-9 6 1140 IPR010561 GO:0006351|GO:0017053
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 30 47 - -
Vium12170g00007 1140 ProSiteProfiles SANT domain profile. 46 83 IPR017884 -
Vium12170g00007 1140 SMART sant 47 95 IPR001005 -
Vium12170g00007 1140 SUPERFAMILY Homeodomain-like 45 94 IPR009057 -
Vium12170g00007 1140 ProSiteProfiles Myb-like domain profile. 49 90 IPR001005 -
Vium12170g00007 1140 Coils Coil 860 880 - -
Vium12170g00007 1140 Pfam DIRP 627 728 IPR033471 -
Vium12170g00007 1140 SMART DIRP_2 628 729 IPR033471 -
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 9 29 - -
Vium12170g00007 1140 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 85 IPR017930 -
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 412 444 - -
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 232 256 - -
Vium12170g00007 1140 FunFam Protein ALWAYS EARLY 3 isoform A 8 103 - -
Vium12170g00007 1140 CDD SANT 51 85 IPR001005 -
Vium12170g00007 1140 MobiDBLite consensus disorder prediction 454 473 - -
Vium12170g00007 1140 Gene3D - 5 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12170g00007 Vium-Chr12170 7886 22536 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium12170g00007 DIRP 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12170g00007 - - gmx:100816217 1829.3