Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12170g00004 ATGAGAGGGGGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTTAATAAGCGGATTTCAAGTACAAATGATTCTCCTGAGAAAGATGGAGTTAATCCAAATAAAAACAAGCAACGGAAGAAAAAGTTGACTGATAAACTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGATTTTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTGGTGTTGTACGAAATAGAACCACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATACCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGTTGGAAGAGAGTGACAGTGAAATGGAGAGCAATGATGCACTAGGATCTCGGAAATTTGTAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTGACAGTGATGGTTGCCTCTATTTACTGAAGAAGAGACGCTTAGATGGTATGGTGCCTCATGCTGTTGGTAAACGGACTCCTCGTGTTCCAGTTTCTTATTCTTATAAGAAAGAGTATACAGAAAATTATGTTTCACCTTATAGAAGAAGCCTAAAGTCAACTACTGATGCTAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCCTTAACTGAGGCTGCACAAAGAGGAGGGTCTCCCCAAGTTTCTCAATCACCATGTAGAAGAGCAGATAAAAAACCCTCACCTGTCCTGCGTTGGGAAAGAAAGCAGCAACTGTCAGAGACAGCTCGTGCCAAGTTACACAATCTTTCAGTGGATGAAGAGTTACTAGACGGTAGTATAGAAAGCAGGGGAGCTGACAATGGAGAATATGCAAGAGATAATAGTTCATTGATTGATATGGAAGGCACAGGAACAGTTGAGGTTCTTCAAAAGGGGGGGAAATTTTACAGAAAGAAAGAGAGAGTGAAAAACGTTGGAAACCATCAGCTTGATGATGGAGGGGAAGCATGTAGTGGCACTGAAGAAGGGCTTAGTTGCTCACTGAAGGAAATGGTTGATATTGAGGTTACTAATGAAAAGCTTGAAAAATTCTCTCCAAAAGGTGGGAGGAAACGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTGGCAGACCTGTCTCTAATGATGCCAATATCTACAGTAGATTCTGAATCATCTATCCAATTGAAGGGAGACAGGATTTCTGCTGATAAAGATGGTAAGTCTGCGCTACCTGAAGCAACACTAACAAGCCATAAGAGACATAAACTTAAACACAGCGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCCAAGCTTGGAAAGGAATCGACAAAGGATACGAACGTGCTTTCTGAATCAAAAGAACAACTTCCTATTGCTGATGCAACATGGAAAAGAAAGCGGAAGTCTGTGGTTTCCAAGGTTGCAAATGCAAAGCTTGATTCTTGTCCAAGTGGTCCCTTGAAAGATGAGGCTTTAGATGATGAGAAAAAACCAGTAGTTAAAGGAAAACATGGTGATCAGGTTTTTACCCTACCAAAGCAATTGAAGACCGTTAAATCATCAGAGAGTTCCTTGTGTATTGATCAGAAAGAGACAGGACCAATGGCGGAAATTCCACTTTTGAACGAAGTTAGTTTACCAACTAAACGAAGTAGACGGAAGATGAATTTACAGAGAACTTTCTCTGCTAAGGAAAAGTCTTCTGAATCCATATTGAAAAGTCAAGCTAACAAGCACTCTGATTTAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTTGTAAGAGGCTCCCTTGGCAAACCTCGGCGGCTTTCTGAACATTTTCTTCGTGATGAAAGGCAAAAACTTGCAGAGTATCGGGAATCAGTGAGAAAGCATTATGCTGAACTGCGAACTGGCATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGGCAGAGAGTAATTGCTATTCATCCGAAAACAAGAGAGATTCATGATGGTAGCGTGCTTACCGTTGATTATGATAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAGTTTGTCATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAGAAGCTCTGAGGAGGCATATTGATGACAGAAAAGGATCTTTTATGCCTATAGAGCCACATATTAATGGAAATTCACATTTTGGGGGGTGCGAAAATCATTCCTCACCTTTGAAGGTACATACTTCATCAAGTGCTTTAGTAATGCATGGAAAGGCTACGGTTGCTACCATGGATAACTTGTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTAACACACCATCAAGCTAGGGAAGCTGACATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACATTGTTGATAGAGCTTCGAAGTTCAAATAGCGATATATTGGAAAACCAAAATGGCATAGAATGCTTGAACGATTCTGAGGTTTTCAAGAAGCATTATGCCACGGTTTCTGATGCAATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCACAAACAGGTTTTAGTGTTCATGACGATCTTCCCAGTATGTTGGATGGTTCTCTTACACAAGAGTTTGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGGTCAAGGGCACATGCAATGGTAGATGCTGCATTTAAGGCATTGACTTTGACAAAGGAAGGTGAAGATGGTTTCGTGAAGATTGGGCAAGCTTTGGATTCTATTAATCATCAGCAGTTGGCCTCCAAGTCTAGGTTACCTGTGATCAGGTCTCAAGAGCAAGTGAACGCAAATGGCAGTTTTTATCATGTTAATAATTCAACTTGCAGTGTATCAGAGTCTATAATTAACGATCCATCTGGTGCAAAACTACATAATTATTCTGAGAAATTTGATACTGAACTTCCGTCAGATCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCAGTTAGCAGCCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACACAGATTTTAGCTTTGATCCCTACTTGA 3393 0.4073 MRGGSMAPTRKSRSVNKRISSTNDSPEKDGVNPNKNKQRKKKLTDKLGSQWSKEELERFYEAYRMYGKDWKKVAGVVRNRTTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEMESNDALGSRKFVKRKREKVQLSVSKDQSHSIADSDGCLYLLKKRRLDGMVPHAVGKRTPRVPVSYSYKKEYTENYVSPYRRSLKSTTDANDDEVAHVVALALTEAAQRGGSPQVSQSPCRRADKKPSPVLRWERKQQLSETARAKLHNLSVDEELLDGSIESRGADNGEYARDNSSLIDMEGTGTVEVLQKGGKFYRKKERVKNVGNHQLDDGGEACSGTEEGLSCSLKEMVDIEVTNEKLEKFSPKGGRKRNKKLFFGDETPALNALQTLADLSLMMPISTVDSESSIQLKGDRISADKDGKSALPEATLTSHKRHKLKHSVVPEIEVSTSKKSKLGKESTKDTNVLSESKEQLPIADATWKRKRKSVVSKVANAKLDSCPSGPLKDEALDDEKKPVVKGKHGDQVFTLPKQLKTVKSSESSLCIDQKETGPMAEIPLLNEVSLPTKRSRRKMNLQRTFSAKEKSSESILKSQANKHSDLKEKLSSCLSSNMVRRWFIFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLRDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPEALRRHIDDRKGSFMPIEPHINGNSHFGGCENHSSPLKVHTSSSALVMHGKATVATMDNLCAQAGCVQPCKVTHHQAREADIHALSELKRALDKKETLLIELRSSNSDILENQNGIECLNDSEVFKKHYATVSDAMLQLRQRNTYRGNSLPPWMKPQTGFSVHDDLPSMLDGSLTQEFGSTVVQIIKGSRSRAHAMVDAAFKALTLTKEGEDGFVKIGQALDSINHQQLASKSRLPVIRSQEQVNANGSFYHVNNSTCSVSESIINDPSGAKLHNYSEKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12170g00004 1130 Coils Coil 861 881 - -
Vium12170g00004 1130 PANTHER LIN-9 6 1130 IPR010561 GO:0006351|GO:0017053
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 413 445 - -
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 1 47 - -
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 30 47 - -
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 455 474 - -
Vium12170g00004 1130 ProSiteProfiles SANT domain profile. 46 83 IPR017884 -
Vium12170g00004 1130 SMART sant 47 95 IPR001005 -
Vium12170g00004 1130 ProSiteProfiles Myb-like domain profile. 49 90 IPR001005 -
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 232 255 - -
Vium12170g00004 1130 Coils Coil 681 701 - -
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 458 473 - -
Vium12170g00004 1130 MobiDBLite consensus disorder prediction 9 29 - -
Vium12170g00004 1130 SUPERFAMILY Homeodomain-like 45 94 IPR009057 -
Vium12170g00004 1130 Pfam DIRP 628 729 IPR033471 -
Vium12170g00004 1130 Gene3D - 5 103 - -
Vium12170g00004 1130 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 85 IPR017930 -
Vium12170g00004 1130 SMART DIRP_2 629 730 IPR033471 -
Vium12170g00004 1130 Pfam Myb-like DNA-binding domain 49 86 IPR001005 -
Vium12170g00004 1130 FunFam Protein ALWAYS EARLY 3 isoform A 8 103 - -
Vium12170g00004 1130 CDD SANT 51 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12170g00004 Vium-Chr12170 7884 22536 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium12170g00004 DIRP 4.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12170g00004 - - gmx:100789533 1808.88