Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12170g00002 ATGAGAGGGGGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTTAATAAGCGGATTTCAAGTACAAATGATTCTCCTGAGAAAGATGGAGTTAATCCAAATAAAAACAAGCAACGGAAAAAGTTGACTGATAAACTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGATTTTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTGGTGTTGTACGAAATAGAACCACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATACCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGTTGGAAGAGAGTGACAGTGAAATGGAGAGCAATGATGCACTAGGATCTCGGAAATTTGTAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTGACAGTGATGGTTGCCTCTATTTACTGAAGAAGAGACGCTTAGATGGTATGGTGCCTCATGCTGTTGGTAAACGGACTCCTCGTGTTCCAGTTTCTTATTCTTATAAGAAAGAGTATACAGAAAATTATGTTTCACCTTATAGAAGAAGCCTAAAGTCAACTACTGATGCTAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCCTTAACTGAGGCTGCACAAAGAGGAGGGTCTCCCCAAGTTTCTCAATCACCATGTAGAAGAGCAGATAAAAAACCCTCACCTGTCCTGCGTTGGGAAAGAAAGCAGCAACTGTCAGAGACAGCTCGTGCCAAGTTACACAATCTTTCAGTGGATGAAGAGTTACTAGACGGTAGTATAGAAAGCAGGGGAGCTGACAATGGAGAATATGCAAGAGATAATAGTTCATTGATTGATATGGAAGGCACAGGAACAGTTGAGGTTCTTCAAAAGGGGGGGAAATTTTACAGAAAGAAAGAGAGAGTGAAAAACGTTGGAAACCATCAGCTTGATGATGGAGGGGAAGCATGTAGTGGCACTGAAGAAGGGCTTAGTTGCTCACTGAAGGAAATGGTTGATATTGAGGTTACTAATGAAAAGCTTGAAAAATTCTCTCCAAAAGGTGGGAGGAAACGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTGGCAGACCTGTCTCTAATGATGCCAATATCTACAGTAGATTCTGAATCATCTATCCAATTGAAGGGAGACAGGATTTCTGCTGATAAAGATGGTAAGTCTGCGCTACCTGAAGCAACACTAACAAGCCATAAGAGACATAAACTTAAACACAGCGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCCAAGCTTGGAAAGGAATCGACAAAGGATACGAACGTGCTTTCTGAATCAAAAGAACAACTTCCTATTGCTGATGCAACATGGAAAAGAAAGCGGAAGTCTGTGGTTTCCAAGGTTGCAAATGCAAAGCTTGATTCTTGTCCAAGTGGTCCCTTGAAAGATGAGGCTTTAGATGATGAGAAAAAACCAGTAGTTAAAGGAAAACATGGTGATCAGGTTTTTACCCTACCAAAGCAATTGAAGACCGTTAAATCATCAGAGAGTTCCTTGTGTATTGATCAGAAAGAGACAGGACCAATGGCGGAAATTCCACTTTTGAACGAAGTTAGTTTACCAACTAAACGAAGTAGACGGAAGATGAATTTACAGAGAACTTTCTCTGCTAAGGAAAAGTCTTCTGAATCCATATTGAAAAGTCAAGCTAACAAGCACTCTGATTTAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTTGTAAGAGGCTCCCTTGGCAAACCTCGGCGGCTTTCTGAACATTTTCTTCGTGATGAAAGGCAAAAACTTGCAGAGTATCGGGAATCAGTGAGAAAGCATTATGCTGAACTGCGAACTGGCATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGGCAGAGAGTAATTGCTATTCATCCGAAAACAAGAGAGATTCATGATGGTAGCGTGCTTACCGTTGATTATGATAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAGTTTGTCATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAGAAGCTCTGAGGAGGCATATTGATGACAGAAAAGGATCTTTTATGCCTATAGAGCCACATATTAATGGAAATTCACATTTTGGGGGGTGCGAAAATCATTCCTCACCTTTGAAGGTACATACTTCATCAAGTGCTTTAGTAATGCATGGAAAGGCTACGGTTGCTACCATGGATAACTTGTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTAACACACCATCAAGCTAGGGAAGCTGACATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACATTGTTGATAGAGCTTCGAAGTTCAAATAGCGATATATTGGAAAACCAAAATGGCATAGAATGCTTGAACGATTCTGAGGTTTTCAAGAAGCATTATGCCACGGTTTCTGATGCAATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCACAAACAGGTTTTAGTGTTCATGACGATCTTCCCAGTATGTTGGATGGTTCTCTTACACAAGAGTTTGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGGTCAAGGGCACATGCAATGGTAGATGCTGCATTTAAGGCATTGACTTTGACAAAGGAAGGTGAAGATGGTTTCGTGAAGATTGGGCAAGCTTTGGATTCTATTAATCATCAGCAGTTGGCCTCCAAGTCTAGGTTACCTGTGATCAGGTCTCAAGAGCAAGTGAACGCAAATGGCAGTTTTTATCATGTTAATAATTCAACTTGCAGTGTATCAGAGTCTATAATTAACGATCCATCTGGTGCAAAACTACATAATTATTCTGAGAAATTTGATACTGAACTTCCGTCAGATCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCAGTTAGCAGCCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACACAGATTTTAGCTTTGATCCCTACTTGA 3390 0.4074 MRGGSMAPTRKSRSVNKRISSTNDSPEKDGVNPNKNKQRKKLTDKLGSQWSKEELERFYEAYRMYGKDWKKVAGVVRNRTTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEMESNDALGSRKFVKRKREKVQLSVSKDQSHSIADSDGCLYLLKKRRLDGMVPHAVGKRTPRVPVSYSYKKEYTENYVSPYRRSLKSTTDANDDEVAHVVALALTEAAQRGGSPQVSQSPCRRADKKPSPVLRWERKQQLSETARAKLHNLSVDEELLDGSIESRGADNGEYARDNSSLIDMEGTGTVEVLQKGGKFYRKKERVKNVGNHQLDDGGEACSGTEEGLSCSLKEMVDIEVTNEKLEKFSPKGGRKRNKKLFFGDETPALNALQTLADLSLMMPISTVDSESSIQLKGDRISADKDGKSALPEATLTSHKRHKLKHSVVPEIEVSTSKKSKLGKESTKDTNVLSESKEQLPIADATWKRKRKSVVSKVANAKLDSCPSGPLKDEALDDEKKPVVKGKHGDQVFTLPKQLKTVKSSESSLCIDQKETGPMAEIPLLNEVSLPTKRSRRKMNLQRTFSAKEKSSESILKSQANKHSDLKEKLSSCLSSNMVRRWFIFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLRDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPEALRRHIDDRKGSFMPIEPHINGNSHFGGCENHSSPLKVHTSSSALVMHGKATVATMDNLCAQAGCVQPCKVTHHQAREADIHALSELKRALDKKETLLIELRSSNSDILENQNGIECLNDSEVFKKHYATVSDAMLQLRQRNTYRGNSLPPWMKPQTGFSVHDDLPSMLDGSLTQEFGSTVVQIIKGSRSRAHAMVDAAFKALTLTKEGEDGFVKIGQALDSINHQQLASKSRLPVIRSQEQVNANGSFYHVNNSTCSVSESIINDPSGAKLHNYSEKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12170g00002 1129 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 84 IPR017930 -
Vium12170g00002 1129 Coils Coil 680 700 - -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 457 472 - -
Vium12170g00002 1129 Pfam Myb-like DNA-binding domain 48 85 IPR001005 -
Vium12170g00002 1129 CDD SANT 50 84 IPR001005 -
Vium12170g00002 1129 SMART sant 46 94 IPR001005 -
Vium12170g00002 1129 ProSiteProfiles Myb-like domain profile. 48 89 IPR001005 -
Vium12170g00002 1129 Coils Coil 860 880 - -
Vium12170g00002 1129 ProSiteProfiles SANT domain profile. 45 82 IPR017884 -
Vium12170g00002 1129 SUPERFAMILY Homeodomain-like 45 93 IPR009057 -
Vium12170g00002 1129 SMART DIRP_2 628 729 IPR033471 -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 9 29 - -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 231 254 - -
Vium12170g00002 1129 Gene3D - 5 102 - -
Vium12170g00002 1129 Pfam DIRP 627 728 IPR033471 -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 30 45 - -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 1 45 - -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 412 444 - -
Vium12170g00002 1129 MobiDBLite consensus disorder prediction 454 473 - -
Vium12170g00002 1129 PANTHER LIN-9 6 1129 IPR010561 GO:0006351|GO:0017053
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12170g00002 Vium-Chr12170 7883 22536 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium12170g00002 DIRP 4.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12170g00002 - - gmx:100816217 1803.1