Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12159g00001 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACCAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTCCAAGGAGGAGCACCGGGAACAGCTTCATACAGTGGTGTGCCGGCGGCAGGAGGACCGGCACTAGCACCGCCGCCGCCGCCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACAATGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGGTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAAGTACCTTTTCCACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAACCCTCATTTTCTGCATATCGTCCACCACCTCAGTTGCAACAACTTCCAAAAAGGCAACCCCCTCCTTCCCCTACTGACTCACAGACTCAGCAACGTACCACGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATAGCCAAGGGAGGAACTGA 828 0.4964 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPAAGGPALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATMYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRSTFSTPQPHRIPAGPSYLYYPTPMEPSFSAYRPPPQLQQLPKRQPPPSPTDSQTQQRTTSEAAGGVVITSESSNSQGRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12159g00001 275 Gene3D - 3 111 IPR012677 -
Vium12159g00001 275 PANTHER BOULE-RELATED 6 252 - -
Vium12159g00001 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vium12159g00001 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Vium12159g00001 275 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Vium12159g00001 275 MobiDBLite consensus disorder prediction 220 275 - -
Vium12159g00001 275 MobiDBLite consensus disorder prediction 91 136 - -
Vium12159g00001 275 MobiDBLite consensus disorder prediction 245 275 - -
Vium12159g00001 275 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Vium12159g00001 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vium12159g00001 275 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12159g00001 Vium-Chr12159 69 4950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12159g00001 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.47e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12159g00001 K25006 - gmx:100788516 403.675