Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12157g00002 ATGTGGTTTTGTAGCGTCCTTGTCCAATTGGTCAAACGCTTCGGGATCAAAAAATGGTCGCACATCGCCAGGTTGCTGAATGGCAGGGTTGGGAAACAGTGCAGAGAGAGGTGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCATGGAGCGAAGAGGAGGACAAAATCCTGATCGAAGCTCACAAGGAACTCGGGAACAAATGGGCAGAGATTGCAAGGAGAATGCCGGGAAGGACCGAAAACACCATCAAGAACCACTGGAACGCCACCAAGCGTCGCCAGAAGGCCAAGAGGCAGAGGAACAAGCGCAGGAGCTCCAAGGGGTCACCCACGCTACTCGAGAGCTACATAAGGAAAGTCACTGCGGCGGAAGAATCTGAGAAGGAGTTGAAGAACTCCATGAGCAAGATGAACCTGAATGACACCACCAAAACGGGTCTCTTTCGGGTTCGGTACGAGAGCTCCGAAGGTGACTTCAGCTCCGAGGAGGAGGAGCTTGGCTGGACCCTGCAGCACCACGTGCCATGTGGTGGCGATGGTGGTTATGTGCCAGTGATGGTGAACGCTGGGGAAGAGAGCGCCATTGATTACGAGGTTGCCATGCAGATGGTACCAGAGGTCCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGGTTAA 678 0.528 MWFCSVLVQLVKRFGIKKWSHIARLLNGRVGKQCRERWHNHLRPNIRKESWSEEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRSSKGSPTLLESYIRKVTAAEESEKELKNSMSKMNLNDTTKTGLFRVRYESSEGDFSSEEEELGWTLQHHVPCGGDGGYVPVMVNAGEESAIDYEVAMQMVPEVQMRKEMDLMEMIYRKG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12157g00002 225 ProSiteProfiles Myb-like domain profile. 7 42 IPR001005 -
Vium12157g00002 225 MobiDBLite consensus disorder prediction 83 115 - -
Vium12157g00002 225 MobiDBLite consensus disorder prediction 90 107 - -
Vium12157g00002 225 CDD SANT 7 42 IPR001005 -
Vium12157g00002 225 FunFam Transcription factor MYB119 49 112 - -
Vium12157g00002 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 42 IPR017930 -
Vium12157g00002 225 SMART sant 4 44 IPR001005 -
Vium12157g00002 225 SMART sant 47 95 IPR001005 -
Vium12157g00002 225 PANTHER MYB PROTEIN-RELATED 6 113 - -
Vium12157g00002 225 Coils Coil 115 135 - -
Vium12157g00002 225 Gene3D - 5 47 - -
Vium12157g00002 225 SUPERFAMILY Homeodomain-like 22 99 IPR009057 -
Vium12157g00002 225 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Vium12157g00002 225 FunFam Transcriptional activator Myb isoform A 5 48 - -
Vium12157g00002 225 CDD SANT 50 93 IPR001005 -
Vium12157g00002 225 Gene3D - 49 114 - -
Vium12157g00002 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Vium12157g00002 225 Pfam Myb-like DNA-binding domain 48 90 IPR001005 -
Vium12157g00002 225 Pfam Myb-like DNA-binding domain 7 42 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12157g00002 Vium-Chr12157 7151 10612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12157g00002 6 122 MYB Transcription Factor Family AT4G18770 69.231 1.45e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium12157g00002 Myb_DNA-binding 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12157g00002 K09422 - gmx:100793032 310.457