Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12153g00002 ATGCTCCAAGTAGTAGCCGCTGGGAGAATGACTTCCTCTGAAACCTTGCGAAGTGTTGAAGAAGATGATTCTACAGCTAAGAAAAAACGCGACTTGTTCTACGATGTTTATGGACCCGAAGGCAAGGCAGAGGTTGTTTTCAATTCACCAGAAGATAATTCAGTTCTTGATCTAAAGGATATTCAAGGACTTGTAACTTGGGTGCTTGGGGAAGGATTTATGCCGTCATGGGTTTTTATCAAGAATAAACCCCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTAGATGCAGCCTTGTTCTTGTCGCTGTCTAAAATGCTTCACAATTTAAAGAAAATCTGTGGTAAACCAAGGCCTGTGCTGGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGAAAAAGGGATGAGAATAGACCTGCTCTGACATCACATCAAGAAGAAGGTTCTCATGATACAGACAGTCTAACATTTACTGAGCTTACGAAAGACATACCTTTCCCTGTTACATACTATACACTAACTGAGAAAGAGCTAGAAGAGAATGGATATTCTCTTAATCAACCAGGTTTTCTTTCTACTTTGCCTGCACCTCCAGGATCTCCTTTTCATGAGATGTTGGCACTAGATTGTGAGATGTGCATAACAAATGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGACATCAAAGGACAGGTTTTGATAGATAGATTGGTTAAACCGTCAAATGCTATCATTGACTACAACACAAGATTTAGTGGAATAACGCCTGAAATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAACTGTTCCTAAAGTTTGTTTACGAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAGATATCCCATGATGTGATCATAGACACGGCAGTGTTGTACAGACACCCCCGGGGAACATCTCATAAAAAAGCTCTACGGTTTCTTGCTAAGAAATTTCTAGCAAGGGAGATACAACAATCAACGAATGGACATGACAGCATCGAAGATGCTAGAGCTACCCTGGAATTGGCACTATTGAAGATAAGAAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTACAAGGAAAAAGTTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCGTCATTGATTGATGATATATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCAGTGATCTCTGATGATGAAGCACTTGCAAAGACCAAGAAGGAGGTGAAGAATGACAAGGTACATTTTATCTGGACACAGTTTTCGGAGCTACACTCATACCTGAAGAAGCAAGCTGAAGATTCTGATAGTTTGAATGAAAGACTTGCCGAGATGATGGCATTACAAACGTGCCAGAACAATTCTGCTAAACAGAAAGGCTTCAAGTTGAAAGCACCTGCTGAACTGAAGGAAATTATGGCTCGCATGGATGCTAGAATTTATAATCTCTACTTGTCTTTACCCACAAATGGTATGATGATAATTTTTACTGGTCACGGAGACACTGCTATTGTCCGCAGGTTGAGGAGAATGCTTGCAGAGCAGAATGAAAGTAATTTATGCCGTGAGAAGATTGTAGAAACTTTGGCAGAATTTCAGGCCCAAGCAGAAGTAGCATTGTGTTTTGTAGGCGTAAAGCATTGA 1722 0.4088 MLQVVAAGRMTSSETLRSVEEDDSTAKKKRDLFYDVYGPEGKAEVVFNSPEDNSVLDLKDIQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSLSKMLHNLKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRDENRPALTSHQEEGSHDTDSLTFTELTKDIPFPVTYYTLTEKELEENGYSLNQPGFLSTLPAPPGSPFHEMLALDCEMCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLDGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHDVIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSTNGHDSIEDARATLELALLKIRNGPDFGSPPSFTRKKFLSILSESGKTSSLIDDISIVKRYASESSNAIPVISDDEALAKTKKEVKNDKVHFIWTQFSELHSYLKKQAEDSDSLNERLAEMMALQTCQNNSAKQKGFKLKAPAELKEIMARMDARIYNLYLSLPTNGMMIIFTGHGDTAIVRRLRRMLAEQNESNLCREKIVETLAEFQAQAEVALCFVGVKH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12153g00002 573 CDD REX1_like 219 368 IPR034922 -
Vium12153g00002 573 SUPERFAMILY Ribonuclease H-like 218 371 IPR012337 -
Vium12153g00002 573 Coils Coil 454 474 - -
Vium12153g00002 573 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 31 382 IPR047021 GO:0004527
Vium12153g00002 573 Pfam Exonuclease 220 366 IPR013520 -
Vium12153g00002 573 Gene3D - 215 376 IPR036397 GO:0003676
Vium12153g00002 573 FunFam RNA exonuclease NEF-sp 215 378 - -
Vium12153g00002 573 SMART exoiiiendus 217 376 IPR013520 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12153g00002 218 366 C2H2 Transcription Factor Family AT3G27970 26.946 8.55e-07 49.7