Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12153g00001 ATGTCATTGGTTATATCTACAGAGTTGGCTGATGCATCATATAGGAATGCCAAGCTCTACACACTAAAGGGAACTGATGTTACACCTGATCTGTCCTCCCACAATTTTGTTCCGGATAAGCACAGAAACATGTATATCACAGATTCTTACTCCAGTGAGAATTATGAAAAGTACTTCCGTGATTCACCATCAGAAGAACTGATAGAACCGTCTAGTTCCAGCATATCAGGAAACTCAGTTCACCCTGACTCTTCTTACCTTCTCCGAGCTAGTTCAGGAGCTTCTGTGATTGTTAATAACCCATTCGACAGTCGTATCTTGTCTACAAGGCATCACAACGCCTATCAGTCCAGTTTTGAATCAGATTTTCTGGAAAATAGGAGCCCTGATGGCCTTGACTTTGATGGTGAAATGAGATTAAAACTACAAGAATTGGAGAAGGCTTTGTTTTCGGATGAAGAAGAGGAGGAGGAAGACATATTTGAGACTGCCCAAATCATGGACATTGATCCTGACATGGCTGAGTGGGCCAATCCACTTCAAGGTATGCTACTTCATGACTCACCAAAGGAGTCCTCATCCTCTGATTCTTCCAATATTAGCAGCATAAGTAGCACCACCAAAGAAACTTCACAGAACTCACCCCAGACCCCCAAACAATTACTTTATGAATGTGCTAGTGCGCTTTCAGAAGGAAATGAAGAGCAAGCCCAATCTATGATAAACAATCTCAGGCAAATGGTCTCAATTCAGGGGGAACCTTCTCAAAGAATTGCAGCCTACATGGTGGAAGGGCTTGCAGCTCGCGTTGCTTCATCCGGAAAATGCATCTATCAAGCATTGAGATGCAAAGAACCTCCTTCTTCAGATCGTCTTGCAGCTATGCAGATCCTATTTGAGATCTGCCCGTGTTTTAAATTCGGATTCATCGCTGCAAATGGTGCTATAGTTGAGGCTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAGCCAAGGAACACAGTACATAACTCTAATACAAGCACTTGCTTCAATGCCAGGTAGGCGACCTCATGTGAGATTAACTGGGGTGGATGATCCTGAGACTGTGCAGCGCTCTGTTGGTGGCATGAACATCATAGGAAAAAGGCTTGAAAAGCTGGCAGAGGAACTTGGATTGTCATTTGAGTTTCGAGCAGTGGCTTCAAAGACCTCAATTGTCTCACCATCAATGCTCAATTGTCGTCCGGGAGAAGCACTTGTAGTGAACTTTGCATTCCAGCTTCATCACATGCGTGATGAAACTGTATCCACAGTGAACGAGAGAGACCAACTTCTTCGCATGGTTAAGTGCTTGAATCCAAAACTTGTGACAATTGTGGAGCAGGACATGAACACCAACACCTCCCCTTTTCTCCAAAGATTTGTTGAAGCATACAATTACTACTCTGCTGTGTTTGACACTCTTGATGCAACTCTGCCTAGGGAGAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCAAAGGACATTGTCAACATTGTGGCTTGTGAGGGCGAGGATTGA 1560 0.4378 MSLVISTELADASYRNAKLYTLKGTDVTPDLSSHNFVPDKHRNMYITDSYSSENYEKYFRDSPSEELIEPSSSSISGNSVHPDSSYLLRASSGASVIVNNPFDSRILSTRHHNAYQSSFESDFLENRSPDGLDFDGEMRLKLQELEKALFSDEEEEEEDIFETAQIMDIDPDMAEWANPLQGMLLHDSPKESSSSDSSNISSISSTTKETSQNSPQTPKQLLYECASALSEGNEEQAQSMINNLRQMVSIQGEPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPPSSDRLAAMQILFEICPCFKFGFIAANGAIVEAVRDEKKVHIIDFDISQGTQYITLIQALASMPGRRPHVRLTGVDDPETVQRSVGGMNIIGKRLEKLAEELGLSFEFRAVASKTSIVSPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVNIVACEGED 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12153g00001 519 Pfam GRAS domain family 219 519 IPR005202 -
Vium12153g00001 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 199 516 IPR005202 -
Vium12153g00001 519 ProSiteProfiles GRAS family profile. 209 519 IPR005202 -
Vium12153g00001 519 MobiDBLite consensus disorder prediction 184 218 - -
Vium12153g00001 519 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12153g00001 Vium-Chr12153 22716 27218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12153g00001 1 519 GRAS Transcription Factor Family AT1G21450 59.546 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium12153g00001 GRAS 7.7e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12153g00001 - - gmx:100807048 838.18