Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12152g00008 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATAAAAAGGGTTTTCACTCACCACTCCAAGGGGAAGCAGGATGCGGATAACAAAGGCACAAAAGAAAAGAAGAAAAGTTTAGGAAAACTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGTATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCCAAAACTCCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCTTCTCCAAGGGCTGCTTCTCCCAGGGCTTCTTCCCCGCGAGTTACCTCTCCCAAAGCTGCATCTTTCCGGAATTCTCATCACCACAAGGAGGTTGGCTACAGACCTGAACCAACTTTGAGGCACCAGAATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGTTATATGGCCAGGAGGAGTTTTAGAGCACTAAAGGGTCTGGTGAGGCTCCAAGGAGTAGTAAGAGGACAGAATGTGAAGAGACAGACAGTAAATGCCATGAAACACATGCAACTCTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGATGCAGCAAGTATCTTGGGCAAACTCACTTCTGAAGCAGAAGAGTGGGATGATAGCTTACTTACCAAAGAGGAAGTAGAGGCAAGGTTGCAGAGGAAGGTAGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACACACACCCCAGTGGCAGATACAAGATCAGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTGCACCTGCAGCAGCAACTCCACAAGAAAGACAAGTGCTGAAGAATTTTCAACTGACACCTCCAAGACCATACTCAGAGCAAAAGACTAGTCCAAGACCCGGATCCAGCACTCAAAGACAACAGCAGCCTCATTTTGCTTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAACCGGTACGAACACCTCCCTATAGAACTCCTCAGGCAAACAGTTCAGGCTCTGGCTCTAAATTTCTGAGACCGAGGGGTGTGGGAGCGAATTCACCCTTTGATGTGCCACTGAAGGATGATGAAAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTCTCTGCCAAGGCCAAAGTACGTGCCAGTAGTAATCCTAGAGAAAGGCTTGGTGGAACTCCAACAAGTACTGATTCAAAGAGGAGACTCTCATTCCCATTGTCACAAGGAATAGGGTCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCCAGATAAATTTCAGCCACTTGACTCTATAGGAAATGTGAGTGTGGATTCAACAGTGTCTTTGCCCGCAAGGGTGGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1590 0.4686 MGKKGSWFSAIKRVFTHHSKGKQDADNKGTKEKKKSLGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRPPSPRAPSPRAASPRASSPRVTSPKAASFRNSHHHKEVGYRPEPTLRHQNASATKIQAVYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASILGKLTSEAEEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVADTRSGGFPWWWNWLERQAPAPAAATPQERQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSGSKFLRPRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTLSAKAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQRVPDKFQPLDSIGNVSVDSTVSLPARVGRKPFTRFV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12152g00008 529 MobiDBLite consensus disorder prediction 79 111 - -
Vium12152g00008 529 ProSiteProfiles IQ motif profile. 151 179 IPR000048 GO:0005515
Vium12152g00008 529 MobiDBLite consensus disorder prediction 332 403 - -
Vium12152g00008 529 PANTHER IQ-DOMAIN 5-RELATED 1 476 - -
Vium12152g00008 529 MobiDBLite consensus disorder prediction 1 152 - -
Vium12152g00008 529 MobiDBLite consensus disorder prediction 332 417 - -
Vium12152g00008 529 Pfam Protein of unknown function (DUF4005) 407 480 IPR025064 -
Vium12152g00008 529 MobiDBLite consensus disorder prediction 448 471 - -
Vium12152g00008 529 SMART iq_5 150 172 IPR000048 GO:0005515
Vium12152g00008 529 Gene3D - 149 203 - -
Vium12152g00008 529 MobiDBLite consensus disorder prediction 456 471 - -
Vium12152g00008 529 Pfam IQ calmodulin-binding motif 153 172 IPR000048 GO:0005515
Vium12152g00008 529 MobiDBLite consensus disorder prediction 17 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12152g00008 Vium-Chr12152 32259 36545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12152g00008 1 528 IQD Protein Family AT3G59690 51.332 3.69e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12152g00008 - - gmx:100807777 834.713