Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12152g00006 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATAAAAAGGGTTTTCACTCACCACTCCAAGGGGAAGGATGCGGATAACAAAGGCACAAAAGAAAAGAAGAAAAGTTTAGGAAAACTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGTATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCCAAAACTCCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCTTCTCCAAGGGCTGCTTCTCCCAGGGCTTCTTCCCCGCGAGTTACCTCTCCCAAAGCTGCATCTTTCCGGAATTCTCATCACCACAAGGAGGTTGGCTACAGACCTGAACCAACTTTGAGGCACCAGAATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGTTATATGGCCAGGAGGAGTTTTAGAGCACTAAAGGGTCTGGTGAGGCTCCAAGGAGTAGTAAGAGGACAGAATGTGAAGAGACAGACAGTAAATGCCATGAAACACATGCAACTCTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGATGCAGCAAGTATCTTGGGCAAACTCACTTCTGAAGCAGAAGAGTGGGATGATAGCTTACTTACCAAAGAGGAAGTAGAGGCAAGGTTGCAGAGGAAGGTAGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACACACACCCCAGTGGCAGATACAAGATCAGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTGCACCTGCAGCAGCAACTCCACAAGAAAGACAAGTGCTGAAGAATTTTCAACTGACACCTCCAAGACCATACTCAGAGCAAAAGACTAGTCCAAGACCCGGATCCAGCACTCAAAGACAACAGCAGCCTCATTTTGCTTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAACCGGTACGAACACCTCCCTATAGAACTCCTCAGGCAAACAGTTCAGGCTCTGGCTCTAAATTTCTGAGACCGAGGGGTGTGGGAGCGAATTCACCCTTTGATGTGCCACTGAAGGATGATGAAAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTCTCTGCCAAGGCCAAAGTACGTGCCAGTAGTAATCCTAGAGAAAGGCTTGGTGGAACTCCAACAAGTACTGATTCAAAGAGGAGACTCTCATTCCCATTGTCACAAGGAATAGGGTCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCCAGATAAATTTCAGCCACTTGACTCTATAGGAAATGTGAGTGTGGATTCAACAGTGTCTTTGCCCGCAAGGGTGGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1587 0.4682 MGKKGSWFSAIKRVFTHHSKGKDADNKGTKEKKKSLGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRPPSPRAPSPRAASPRASSPRVTSPKAASFRNSHHHKEVGYRPEPTLRHQNASATKIQAVYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASILGKLTSEAEEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVADTRSGGFPWWWNWLERQAPAPAAATPQERQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSGSKFLRPRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTLSAKAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQRVPDKFQPLDSIGNVSVDSTVSLPARVGRKPFTRFV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12152g00006 528 Gene3D - 148 202 - -
Vium12152g00006 528 Pfam IQ calmodulin-binding motif 152 171 IPR000048 GO:0005515
Vium12152g00006 528 MobiDBLite consensus disorder prediction 331 416 - -
Vium12152g00006 528 ProSiteProfiles IQ motif profile. 150 178 IPR000048 GO:0005515
Vium12152g00006 528 MobiDBLite consensus disorder prediction 447 470 - -
Vium12152g00006 528 MobiDBLite consensus disorder prediction 1 152 - -
Vium12152g00006 528 PANTHER IQ-DOMAIN 5-RELATED 1 475 - -
Vium12152g00006 528 MobiDBLite consensus disorder prediction 455 470 - -
Vium12152g00006 528 MobiDBLite consensus disorder prediction 16 40 - -
Vium12152g00006 528 SMART iq_5 149 171 IPR000048 GO:0005515
Vium12152g00006 528 Pfam Protein of unknown function (DUF4005) 406 479 IPR025064 -
Vium12152g00006 528 MobiDBLite consensus disorder prediction 78 110 - -
Vium12152g00006 528 MobiDBLite consensus disorder prediction 331 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12152g00006 Vium-Chr12152 32259 37134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12152g00006 1 527 IQD Protein Family AT3G59690 50.977 5.28e-163 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12152g00006 - - gmx:100807777 835.484