Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12152g00002 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATAAAAAGGGTTTTCACTCACCACTCCAAGGGGAAGCAGGATGCGGATAACAAAGGCACAAAAGAAAAGAAGAAAAGTTTAGGAAAACTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGTATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCCAAAACTCCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCTTCTCCAAGGGCTGCTTCTCCCAGGGCTTCTTCCCCGCGAGTTACCTCTCCCAAAGCTGCATCTTTCCGGAATTCTCATCACCACAAGGAGGTTGGCTACAGACCTGAACCAACTTTGAGGCACCAGAATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGTTATATGGCCAGGAGGAGTTTTAGAGCACTAAAGGGTCTGGTGAGGCTCCAAGGAGTAGTAAGAGGACAGAATGTGAAGAGACAGACAGTAAATGCCATGAAACACATGCAACTCTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGATGCAGCAAGTATCTTGGGCAAACTCACTTCTGAAGCAGAAGAGTGGGATGATAGCTTACTTACCAAAGAGGAAGTAGAGGCAAGGTTGCAGAGGAAGGTAGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACACACACCCCAGTGGCAGATACAAGATCAGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTGCACCTGCAGCAGCAACTCCACAAGAAAGACAAGTGCTGAAGAATTTTCAACTGACACCTCCAAGACCATACTCAGAGCAAAAGACTAGTCCAAGACCCGGATCCAGCACTCAAAGACAACAGCAGCCTCATTTTGCTTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAACCGGTACGAACACCTCCCTATAGAACTCCTCAGGCAAACAGTTCAGGCTCTGGCTCTAAATTTCTGAGACCGAGGGGTGTGGGAGCGAATTCACCCTTTGATGTGCCACTGAAGGATGATGAAAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTCTCTGCCAAGGCCAAAGTACGTGCCAGTAGTAATCCTAGAGAAAGGCTTGGTGGAACTCCAACAAGTACTGATTCAAAGAGGAGACTCTCATTCCCATTGTCACAAGGAATAGGGTCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCCAGATAAATTTCAGCCACTTGACTCTATAGGAAATGTAGAAGCCAAAAGAACCTCTTGGGAGAAATAG 1554 0.4678 MGKKGSWFSAIKRVFTHHSKGKQDADNKGTKEKKKSLGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRPPSPRAPSPRAASPRASSPRVTSPKAASFRNSHHHKEVGYRPEPTLRHQNASATKIQAVYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASILGKLTSEAEEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVADTRSGGFPWWWNWLERQAPAPAAATPQERQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSGSKFLRPRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTLSAKAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQRVPDKFQPLDSIGNVEAKRTSWEK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12152g00002 517 MobiDBLite consensus disorder prediction 79 111 - -
Vium12152g00002 517 Pfam IQ calmodulin-binding motif 153 172 IPR000048 GO:0005515
Vium12152g00002 517 ProSiteProfiles IQ motif profile. 151 179 IPR000048 GO:0005515
Vium12152g00002 517 PANTHER IQ-DOMAIN 5-RELATED 1 476 - -
Vium12152g00002 517 MobiDBLite consensus disorder prediction 332 403 - -
Vium12152g00002 517 Gene3D - 149 202 - -
Vium12152g00002 517 MobiDBLite consensus disorder prediction 1 152 - -
Vium12152g00002 517 MobiDBLite consensus disorder prediction 332 417 - -
Vium12152g00002 517 SMART iq_5 150 172 IPR000048 GO:0005515
Vium12152g00002 517 MobiDBLite consensus disorder prediction 456 488 - -
Vium12152g00002 517 MobiDBLite consensus disorder prediction 445 517 - -
Vium12152g00002 517 MobiDBLite consensus disorder prediction 17 41 - -
Vium12152g00002 517 Pfam Protein of unknown function (DUF4005) 407 480 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12152g00002 Vium-Chr12152 31466 37735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12152g00002 1 513 IQD Protein Family AT3G59690 50.547 5.87e-153 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12152g00002 - - gmx:100807777 800.431