Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1213g00002 ATGCCTCCAGCCACCTCTTCGCCTACGGCTCAGAGACACGTTGGCTTCAGCCGCCGCACGCAGGCGCCGTTCCAGCTCAACGACTCCTCGAGTCAGCTCCATGATGACTCGCCGCCGGCGAAGAAGTACCGGCTGATGTCAGACATTATGGCGCGTGCCCAGTATGCGGTGGTGGAAAGAGAGACTTACAGTGACCTGTTGTGTGAGCAATGTGGTTCCGGTGAGCTGTCGGACGAGCTGCTTCTCTGCGACAAATGCGACAGAGGCTTCCACATGAAATGCGTGAGGCCGATTGTCGTGAGAATTCCGATTGGATCGTGGCTTTGTCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGTCTTTCTCGCAAAAGAGGATAATTGATTTCTTCGGGATTCGGAGGAGTTATTTTTATGCTGATGACAAGAGTTCTTCTCAGGATGCAAAGAAGCGTAGGAAACGTTCAAGACCTCTGGTATTACATAAGAGAAAAAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCTCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTAAATATAGAATTCTGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCGAATCGAGCCGAACTGGAAAACGGTGACATGCAGATTCTTTCCAAGGAAGACTTAGAGACCGTAGAACACTGTATTGCTATGTCTAAACGAGGCGAATTCCCTCCCTTTATGGTTGTTTACGATTCGTGTCAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACAATTGTTGCTGAATACACTGGCGATGTGGATTACCTTCACAACCGGGAACGTGATGATTGTGACAGCATGATGACCCTTCTTCTTGGAAGAGAAAGTTGTCAAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATCGCTCGCTTTATAAGTGGCATAAACAATCATACACAGGAAGGTAGGAAGAAACAAAACTGCAAATGTGTGAGATACAATGTTGGTGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGACATTTCTAAGGGAGAAAGGCTTTATTATGATTACAATGGTTACGAGTATCATTACCCGACTCATCATTTTGTCTAA 1143 0.4619 MPPATSSPTAQRHVGFSRRTQAPFQLNDSSSQLHDDSPPAKKYRLMSDIMARAQYAVVERETYSDLLCEQCGSGELSDELLLCDKCDRGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRSFSQKRIIDFFGIRRSYFYADDKSSSQDAKKRRKRSRPLVLHKRKRRLLPFVPTKDPAQRLKQMGSLASALTALNIEFCDHLTYLPGMAPRSANRAELENGDMQILSKEDLETVEHCIAMSKRGEFPPFMVVYDSCQGYTVEADDLIKDMTIVAEYTGDVDYLHNRERDDCDSMMTLLLGRESCQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVGGECRVFLVATRDISKGERLYYDYNGYEYHYPTHHFV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1213g00002 380 Pfam SET domain 286 368 IPR001214 GO:0005515
Vium1213g00002 380 SMART PHD_3 67 113 IPR001965 -
Vium1213g00002 380 CDD PHD_RSF1 67 112 - -
Vium1213g00002 380 Pfam PHD-finger 68 113 IPR019787 -
Vium1213g00002 380 ProSiteProfiles Zinc finger PHD-type profile. 65 115 IPR019787 -
Vium1213g00002 380 FunFam Histone-lysine N-methyltransferase ATXR5 151 380 - -
Vium1213g00002 380 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 145 378 - -
Vium1213g00002 380 SUPERFAMILY SET domain 239 369 IPR046341 -
Vium1213g00002 380 ProSitePatterns Zinc finger PHD-type signature. 68 112 IPR019786 -
Vium1213g00002 380 CDD SET_ATXR5_6-like 243 380 - -
Vium1213g00002 380 Gene3D SET domain 151 380 IPR046341 -
Vium1213g00002 380 SUPERFAMILY FYVE/PHD zinc finger 58 117 IPR011011 -
Vium1213g00002 380 ProSiteProfiles SET domain profile. 246 368 IPR001214 GO:0005515
Vium1213g00002 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 126 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1213g00002 Vium-Chr1213 9336 13484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1213g00002 63 134 C2H2 Transcription Factor Family AT3G01460 36.111 2.75e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium1213g00002 SET 7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1213g00002 K24406 - gmx:100785817 664.84