Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12138g00001 ATGAATCATTTTAGGGGATTGTCCCTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGCGGACTTGCTCTGCTAAAAGAGGCTGGAGTTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATAAAAATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCTTACATTCAGAGTCGATATTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAAACGGATGATTGAAATACTTGGGTATGCCACTTTCTCTCAAGGGAGCATTTTAATTAAATAG 423 0.3806 MNHFRGLSLGIVQLFSKQILCGLALLKEAGVIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGYATFSQGSILIK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12138g00001 140 Pfam Protein kinase domain 12 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12138g00001 140 SUPERFAMILY Protein kinase-like (PK-like) 3 133 IPR011009 -
Vium12138g00001 140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
Vium12138g00001 140 PANTHER DUAL SPECIFICITY PROTEIN KINASE 1 129 - -
Vium12138g00001 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12138g00001 140 SMART serkin_6 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12138g00001 140 Gene3D Transferase(Phosphotransferase) domain 1 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12138g00001 Vium-Chr12138 3226 5225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12138g00001 13 128 MAP Kinase Gene Family AT4G11330 45.378 1.30e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vium12138g00001 Pkinase 2.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12138g00001 K18670 - vum:124821123 283.108