Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1212g00010 ATGGCCGCCGCCCCAGCATACGAAGAAGACCTCCCTGCAGCACCGAGCTGGCTGAACAAAGGTGACAACGCGTGGCAGCTAACAGCAGCAACTCTGGTGGGTCTTCAAAGCATGCCAGGCCTAGTCATTCTCTACGCAAGCATAGTAAAGAAAAAATGGGCAGTGAACTCTGCTTTCATGGCTCTCTACGCCTTTGCAGCAGTCCTAATATGTTGGGTCCTCCTGTGCTACCGCATGGCCTTCGGGGACAAACTCTTTCCCTTCTGGGGCAAGGGTGCCCCTGCGCTGGGCCAAAAGTTTCTCATAAACCAGGCCAAGGTCCCTGAGACAACCCACCACTTCAAGAATGGAACCGTTGAAAGCAAGATGTCAGAGCCCTTCTTCGTCATGGCTTCTCTTGTCTACTTCCAGTTCACTTTTGCTGCCATCACTCTTATCTTGTTGGCTGGCTCTGTTCTTGGGAGGATCAACATTAGGGCTTGGATGGCTTTTGTGCCTCTTTGGCTGATTTTCTCTTACACTGTTGGCGCTTTTAGTCTCTGGGGTGGTGGCTTTCTCTACCATTGGGGGGTCATTGATTACTCTGGAGGCTATGTTATTCATCTTTCTTCTGGAATTGCTGGCTTCACTGCTGCTTACTGGGTTGGGCCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTAACGGGTGGTGGGTTGCTGTGGATGGGATGGTCAGGGTTCAATGGTGGAGCACCTTATGCAGCCAACGTTGACGCCTCCATTGCTGTTCTCAACACTAACATTTGTGCAGCCACTAGCCTCCTTGTTTGGACCTCTCTCGATGTCATCTTTTTCTCCAAACCATCTGTCATTGGAGCTGTTCAGGGCATGATTACTGGACTCGTTTGCATCACCCCAGGAGCAGGGCTTGTGCAATCTTGGGCAGCTATAGTGATGGGAATACTTTCAGGAAGCATCCCATGGATGACTATGATGATCCTCCACAAAAAGTCAAGCTTTCTCCAGAAGGTAGATGATGCCCTAGGAGTATTTCACACACATGCAGTTGCGGGCTTATTGGGTGGCCTGCTCACAGGTCTCCTAGCAGAACCTGAGCTTTGTAGGCTCATATTGCCAGTGAACAACTCAAGGGGTGCCTTCTATGGTGGCAGTGGTGGTGTTCAGTTTTTGAAGCAATTGGTGGCAGCATGTTTCATCACAGCATGGAACTTGGTCTCCACCACACTCATTCTTCTAGCCATACAGTTTTTCATACCCTTGAGGATGCCGGACGATCAGCTCGAGATCGGCGACGACGCCATCCACGGCGAAGAAGCCTATGCCCTTTGGGGTGATGGTGAAAAATATGATCCAACCAGGCATGATTCCTCTAGAGTTGATAAAACTTCACCATCTCCCTATGTTAATGGAGCAAGGGGTTTGACCATAGACTTATGA 1461 0.5003 MAAAPAYEEDLPAAPSWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGDKLFPFWGKGAPALGQKFLINQAKVPETTHHFKNGTVESKMSEPFFVMASLVYFQFTFAAITLILLAGSVLGRINIRAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLTGGGLLWMGWSGFNGGAPYAANVDASIAVLNTNICAATSLLVWTSLDVIFFSKPSVIGAVQGMITGLVCITPGAGLVQSWAAIVMGILSGSIPWMTMMILHKKSSFLQKVDDALGVFHTHAVAGLLGGLLTGLLAEPELCRLILPVNNSRGAFYGGSGGVQFLKQLVAACFITAWNLVSTTLILLAIQFFIPLRMPDDQLEIGDDAIHGEEAYALWGDGEKYDPTRHDSSRVDKTSPSPYVNGARGLTIDL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1212g00010 486 PANTHER AMMONIUM TRANSPORTER MEP2 10 459 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium1212g00010 486 FunFam Ammonium transporter 6 451 - -
Vium1212g00010 486 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Vium1212g00010 486 SUPERFAMILY Ammonium transporter 17 430 - -
Vium1212g00010 486 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium1212g00010 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vium1212g00010 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vium1212g00010 486 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
Vium1212g00010 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Vium1212g00010 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Vium1212g00010 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Vium1212g00010 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1212g00010 Vium-Chr1212 76976 83197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1212g00010 130 486 Inorganic Solute Cotransporters AT2G38290 75.487 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1212g00010 K03320 - gmx:100798599 873.233