Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12124g00003 ATGGAGTGTGAAGTGAAGTTACAAGGGGGAGATCTGCATCCAGAGGTGGTAACTGAACCAAACCCTGTTGGTTTTGACAACATGGAAGAAGAACACAGTTTGTCGGTTGCCGAGAGAGAGATGTGGCTGAATGGTGACCAAGACGAGATTCTGGGAGTCAACGAGGCTTCTATGTTCTACGCCGATTTCCCTACTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCTTCTTCATCTTCCGCGCCACCGCTTCCTCTGAAGACCATGACGTGTTCCACCACAACCACAGCAACCACCACCACTTCCTCTTCTTCCTCATCCTCTTCATGGGCCGTGTTGAGGTCAGATGTTGAGGAAGATGTAGAGAAAAATCATGGCAACGGCTACATGCATGACCAGTTTGATGCAACAGCTTTGTCTTCCACCGCTTCCATGGAGATTTCCCAACAGCAAAACCCTGATCCTGGACTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTAGAAGCCAATGACTTCTTCGATCCTGCCTCAATCTTTGAGAACGAGGAGAGCGAAAACCCTTTAATAGAATTTGGCACACTGGAGGAACAGGTGTCACTGCAAGAGGGGCAACAGGAAATGATGCATCAGCGAGAGAACATTGAAGACGATCGCAAGGTTCCTGTGTGTGAAGAGATAAAAGGAGAGGAAGAAGGTGGTGAGGGTGGTGGTGGCGTAGTAGATGATGAAATGAGTAATGTCTTCTTGGAGTGGCTCAAGTCTAACAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGTCAACAATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCTATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGCAAGGAGAATAGTGACAATGTTAACGACCCTCTTCAGGCACAGATTCAGGATCCCAGTGCCCAGAACAACCAGAACACTCACACCAGTGGCTCATTTGCACCTGAATCGAACTCTTGTTTCAACAACCAGACACCCTGGTTGAGTCCTCAAACTTTTGGGACAGATCAGGCCCCTATCATGGTTCCAAATCAGCCCTATTCACAACCCATGGTGGGGTATGTGGGTGACCCTTACACTACTGGTTCTCCTTCCAATAACATCACAGCCACTCATAACCATAACAATAACCCTTACCAACCAGGCACGGACCAATACAACATGATGGAATCAGCACATTCATGGCCTCATTCTCAGTTCAATGTTCCTTCTCCTTATAGCCAGTCTTATGGGGACAACGGTCTTTTCACACCTGGGAGTTTTGGCGGCTATGGCAATAACCAGTATCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTCGATGAGGTTAGGACCCTCTGCAACTAAGGAAGCAAGGAAGAAGAGAATGGCCAGGCAGAGAAGGTTTTTATCTCATCACAGGAATCACAACGGTAATCACCACCAGAATCAAGGGTCTGACCCACATACAAGACTGGGAAGTGATAATTGCACCACTGGTTTGGTTGCACCTCATCAAGCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCCATGGCGGGTGGCCCGGCTGGTCCTATGGCACCGGTGGTACCGACCGATCCACTGGCCGGACAAACGGTGGTGGACCGGTCCACCATGCACACACAGAATTCTCATCAGAATCGAGCTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGAAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATATCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGCCTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGAAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTTTGAAACCAGAAACCAAAAAAGCAGGAAAATCGCAGAAAAACCAGAATGGGACTAATGCATCAAATACAGCTGGAACTGCGGCCAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAGTAG 2274 0.4714 MECEVKLQGGDLHPEVVTEPNPVGFDNMEEEHSLSVAEREMWLNGDQDEILGVNEASMFYADFPTLPDFPCMSSSSSSSSAPPLPLKTMTCSTTTTATTTTSSSSSSSSWAVLRSDVEEDVEKNHGNGYMHDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFENEESENPLIEFGTLEEQVSLQEGQQEMMHQRENIEDDRKVPVCEEIKGEEEGGEGGGGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKSTIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENSDNVNDPLQAQIQDPSAQNNQNTHTSGSFAPESNSCFNNQTPWLSPQTFGTDQAPIMVPNQPYSQPMVGYVGDPYTTGSPSNNITATHNHNNNPYQPGTDQYNMMESAHSWPHSQFNVPSPYSQSYGDNGLFTPGSFGGYGNNQYPYQFFHGPGDRSMRLGPSATKEARKKRMARQRRFLSHHRNHNGNHHQNQGSDPHTRLGSDNCTTGLVAPHQANSAAANWMYWQAMAGGPAGPMAPVVPTDPLAGQTVVDRSTMHTQNSHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGLKPETKKAGKSQKNQNGTNASNTAGTAANNGRSSPPKPKAEKK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12124g00003 757 MobiDBLite consensus disorder prediction 505 527 - -
Vium12124g00003 757 MobiDBLite consensus disorder prediction 336 375 - -
Vium12124g00003 757 MobiDBLite consensus disorder prediction 724 747 - -
Vium12124g00003 757 MobiDBLite consensus disorder prediction 74 110 - -
Vium12124g00003 757 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 260 724 IPR044800 GO:0003700
Vium12124g00003 757 ProSiteProfiles B3 DNA-binding domain profile. 609 711 IPR003340 GO:0003677
Vium12124g00003 757 MobiDBLite consensus disorder prediction 714 757 - -
Vium12124g00003 757 SMART B3_2 609 711 IPR003340 GO:0003677
Vium12124g00003 757 FunFam B3 domain-containing transcription factor FUS3 605 720 - -
Vium12124g00003 757 CDD BfiI_C_EcoRII_N_B3 607 708 - -
Vium12124g00003 757 Gene3D - 605 724 IPR015300 -
Vium12124g00003 757 Pfam B3 DNA binding domain 610 706 IPR003340 GO:0003677
Vium12124g00003 757 SUPERFAMILY DNA-binding pseudobarrel domain 608 704 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12124g00003 Vium-Chr12124 808 5113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12124g00003 39 742 B3 DNA Binding Superfamily AT3G24650 47.861 7.49e-167 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium12124g00003 B3 3.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12124g00003 K09287 - gmx:100795226 1146.34