Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12124g00001 ATGGAGTGTGAAGTGAAGTTACAAGGGGGAGATCTGCATCCAGAGGTGGTAACTGAACCAAACCCTGTTGGTTTTGACAACATGGAAGAAGAACACAGTTTGTCGGTTGCCGAGAGAGAGATGTGGCTGAATGGTGACCAAGACGAGATTCTGGGAGTCAACGAGGCTTCTATGTTCTACGCCGATTTCCCTACTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCTTCTTCATCTTCCGCGCCACCGCTTCCTCTGAAGACCATGACGTGTTCCACCACAACCACAGCAACCACCACCACTTCCTCTTCTTCCTCATCCTCTTCATGGGCCGTGTTGAGGTCAGATGTTGAGGAAGATGTAGAGAAAAATCATGGCAACGGCTACATGCATGACCAGTTTGATGCAACAGCTTTGTCTTCCACCGCTTCCATGGAGATTTCCCAACAGCAAAACCCTGATCCTGGACTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTAGAAGCCAATGACTTCTTCGATCCTGCCTCAATCTTTGAGAACGAGGAGAGCGAAAACCCTTTAATAGAATTTGGCACACTGGAGGAACAGGTGTCACTGCAAGAGGGGCAACAGGAAATGATGCATCAGCGAGAGAACATTGAAGACGATCGCAAGGTTCCTGTGTGTGAAGAGATAAAAGGAGAGGAAGAAGGTGGTGAGGGTGGTGGTGGCGTAGTAGATGATGAAATGAGTAATGTCTTCTTGGAGTGGCTCAAGTCTAACAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGTCAACAATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCTATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGCAAGGAGAATAGTGACAATGTTAACGACCCTCTTCAGGCACAGATTCAGGATCCCAGTGCCCAGAACAACCAGAACACTCACACCAGTGGCTCATTTGCACCTGAATCGAACTCTTGTTTCAACAACCAGACACCCTGGTTGAGTCCTCAAACTTTTGGGACAGATCAGGCCCCTATCATGGTTCCAAATCAGCCCTATTCACAACCCATGGTGGGGTATGTGGGTGACCCTTACACTACTGGTTCTCCTTCCAATAACATCACAGCCACTCATAACCATAACAATAACCCTTACCAACCAGGCACGGACCAATACAACATGATGGAATCAGCACATTCATGGCCTCATTCTCAGTTCAATGTTCCTTCTCCTTATAGCCAGTCTTATGGGGACAACGGTCTTTTCACACCTGGGAGTTTTGGCGGCTATGGCAATAACCAGTATCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTCGATGAGGTTAGGACCCTCTGCAACTAAGGAAGCAAGGAAGAAGAGAATGGCCAGGCAGAGAAGGTTTTTATCTCATCACAGGAATCACAACGGTAATCACCACCAGAATCAAGGGTCTGACCCACATACAAGACTGGGAAGTGATAATTGCACCACTGGTTTGGTTGCACCTCATCAAGCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCCATGGCGGGTGGCCCGGCTGGTCCTATGGCACCGGTGGTACCGACCGATCCACTGGCCGGACAAACGGTGGTGGACCGGTCCACCATGCACACACAGAATTCTCATCAGAATCGAGCTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGAAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATATCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGCACCAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGCCTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGAAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTTTGAAACCAGAAACCAAAAAAGCAGGAAAATCGCAGAAAAACCAGAATGGGACTAATGCATCAAATACAGCTGGAACTGCGGCCAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAGTAG 2280 0.4719 MECEVKLQGGDLHPEVVTEPNPVGFDNMEEEHSLSVAEREMWLNGDQDEILGVNEASMFYADFPTLPDFPCMSSSSSSSSAPPLPLKTMTCSTTTTATTTTSSSSSSSSWAVLRSDVEEDVEKNHGNGYMHDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFENEESENPLIEFGTLEEQVSLQEGQQEMMHQRENIEDDRKVPVCEEIKGEEEGGEGGGGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKSTIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENSDNVNDPLQAQIQDPSAQNNQNTHTSGSFAPESNSCFNNQTPWLSPQTFGTDQAPIMVPNQPYSQPMVGYVGDPYTTGSPSNNITATHNHNNNPYQPGTDQYNMMESAHSWPHSQFNVPSPYSQSYGDNGLFTPGSFGGYGNNQYPYQFFHGPGDRSMRLGPSATKEARKKRMARQRRFLSHHRNHNGNHHQNQGSDPHTRLGSDNCTTGLVAPHQANSAAANWMYWQAMAGGPAGPMAPVVPTDPLAGQTVVDRSTMHTQNSHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYSTRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGLKPETKKAGKSQKNQNGTNASNTAGTAANNGRSSPPKPKAEKK 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12124g00001 759 MobiDBLite consensus disorder prediction 505 527 - -
Vium12124g00001 759 MobiDBLite consensus disorder prediction 716 759 - -
Vium12124g00001 759 CDD BfiI_C_EcoRII_N_B3 607 710 - -
Vium12124g00001 759 MobiDBLite consensus disorder prediction 336 375 - -
Vium12124g00001 759 SMART B3_2 609 713 IPR003340 GO:0003677
Vium12124g00001 759 MobiDBLite consensus disorder prediction 74 110 - -
Vium12124g00001 759 Pfam B3 DNA binding domain 610 708 IPR003340 GO:0003677
Vium12124g00001 759 ProSiteProfiles B3 DNA-binding domain profile. 609 713 IPR003340 GO:0003677
Vium12124g00001 759 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 260 726 IPR044800 GO:0003700
Vium12124g00001 759 MobiDBLite consensus disorder prediction 726 749 - -
Vium12124g00001 759 FunFam B3 domain-containing transcription factor FUS3 605 722 - -
Vium12124g00001 759 Gene3D - 600 718 IPR015300 -
Vium12124g00001 759 SUPERFAMILY DNA-binding pseudobarrel domain 608 706 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12124g00001 Vium-Chr12124 808 5124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12124g00001 39 744 B3 DNA Binding Superfamily AT3G24650 47.733 7.49e-165 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium12124g00001 B3 7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12124g00001 K09287 - gmx:100795226 1141.33