Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12114g00009 ATGTCTGTTCAAAAGGACACAGATAAGTTCTTCATGTCAATCACTGAAGGAGAGAAAAAGCCATTTGACTTTTTACGTGTTCTATATGATGGTTGCATTGCTGGAGGTGTTGCGGGTGTCATGGTAGAGACAGCTTTATACCCCATTGATACCATAAAAACTCGACTACAGGTAGCTCGTGATGGAGGAAAGATTGTTCTGAAGGGTCTGTACTCTGGGTTGTCTGGAAATCTTGTTGGTGTCTTGCCAGCGTCTGCAATTTTTATTGGAGTGTATGAACCCACAAAGCAGCAATTGCTACAGTCATTGCCTGAGAATCTCAGTGCTGTGGCTCATTTTGCTGCAGGTGCTATTGGAGGCATTGCTTCTTCTATTGTTCGGGTTCCAACAGAGGTTGTTAAGCAAAGGATGCAAATTGGGCAATTTAGATCAGCTCCAGATGCTGTTCGTCTCATTGTCTCAAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGTTCTTTCTTATTGCGAGATTTACCATTTGATGCCATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGGCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGGTGCCATAACTGGAGCAGTCACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAGGGATCACAAAATCATTACAAAGGCATCAGTGATTGTGTGAGGACAATAGTTAAAGAAGAAGGAACTCATGCTCTTTTTAAGGGTATTGGGCCTAGAGTTTTGTGGATAGGAGTTGGCGGTTCAATATTTTTTTGTGTTCTTGAGAAGACAAAGCAAATACTTGCTCGGAATCGGCAAACCAAAGCTGAGATTCGGAAGTGA 894 0.4217 MSVQKDTDKFFMSITEGEKKPFDFLRVLYDGCIAGGVAGVMVETALYPIDTIKTRLQVARDGGKIVLKGLYSGLSGNLVGVLPASAIFIGVYEPTKQQLLQSLPENLSAVAHFAAGAIGGIASSIVRVPTEVVKQRMQIGQFRSAPDAVRLIVSNEGFKGLYAGYGSFLLRDLPFDAIELCIYEQLRIGYKLAAKRDPNDPENAMLGAVAGAITGAVTTPLDVVKTRLMVQGSQNHYKGISDCVRTIVKEEGTHALFKGIGPRVLWIGVGGSIFFCVLEKTKQILARNRQTKAEIRK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12114g00009 297 Gene3D Mitochondrial carrier domain 31 296 IPR023395 -
Vium12114g00009 297 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Vium12114g00009 297 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vium12114g00009 297 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085
Vium12114g00009 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 98 IPR018108 -
Vium12114g00009 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 284 IPR018108 -
Vium12114g00009 297 SUPERFAMILY Mitochondrial carrier 32 279 IPR023395 -
Vium12114g00009 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 189 IPR018108 -
Vium12114g00009 297 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 17 292 - -
Vium12114g00009 297 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 30 297 - -
Vium12114g00009 297 Pfam Mitochondrial carrier protein 32 63 IPR018108 -
Vium12114g00009 297 Pfam Mitochondrial carrier protein 107 187 IPR018108 -
Vium12114g00009 297 Pfam Mitochondrial carrier protein 202 288 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12114g00009 Vium-Chr12114 18671 24640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12114g00009 33 285 Chloroplast and Mitochondria Gene Families AT2G30160 32.384 6.62e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12114g00009 K15111 - gmx:100800051 528.094