Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12114g00007 ATGAGCTCGAAAGTTCCCTCCCCAGATTCAATTGATGCATTGAAGTCTAAAATGTCTGTTCAAAAGGACACAGATAAGTTCTTCATGTCAATCACTGAAGGAGAGAAAAAGCCATTTGACTTTTTACGTGTTCTATATGATGGTTGCATTGCTGGAGGTGTTGCGGGTGTCATGGTAGAGACAGCTTTATACCCCATTGATACCATAAAAACTCGACTACAGGTAGCTCGTGATGGAGGAAAGATTGTTCTGAAGGGTCTGTACTCTGGGTTGTCTGGAAATCTTGTTGGTGTCTTGCCAGCGTCTGCAATTTTTATTGGAGTGTATGAACCCACAAAGCAGCAATTGCTACAGTCATTGCCTGAGAATCTCAGTGCTGTGGCTCATTTTGCTGCAGGTGCTATTGGAGGCATTGCTTCTTCTATTGTTCGGGTTCCAACAGAGGTTGTTAAGCAAAGGATGCAAATTGGGCAATTTAGATCAGCTCCAGATGCTGTTCGTCTCATTGTCTCAAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGTTCTTTCTTATTGCGAGATTTACCATTTGATGCCATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGGCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGGTGCCATAACTGGAGCAGTCACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAGGGATCACAAAATCATTACAAAGGCATCAGTGATTGTGTGAGGACAATAGTTAAAGAAGAAGGAACTCATGCTCTTTTTAAGGGTATTGGGCCTAGAGTTTTGTGGATAGGAGTTGGCGGTTCAATATTTTTTTGTGTTCTTGAGAAGACAAAGCAAATACTTGCTCGGAATCGGCAAACCAAAGCTGAGATTCGGAAGTGA 945 0.4212 MSSKVPSPDSIDALKSKMSVQKDTDKFFMSITEGEKKPFDFLRVLYDGCIAGGVAGVMVETALYPIDTIKTRLQVARDGGKIVLKGLYSGLSGNLVGVLPASAIFIGVYEPTKQQLLQSLPENLSAVAHFAAGAIGGIASSIVRVPTEVVKQRMQIGQFRSAPDAVRLIVSNEGFKGLYAGYGSFLLRDLPFDAIELCIYEQLRIGYKLAAKRDPNDPENAMLGAVAGAITGAVTTPLDVVKTRLMVQGSQNHYKGISDCVRTIVKEEGTHALFKGIGPRVLWIGVGGSIFFCVLEKTKQILARNRQTKAEIRK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12114g00007 314 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 47 314 - -
Vium12114g00007 314 Gene3D Mitochondrial carrier domain 48 313 IPR023395 -
Vium12114g00007 314 SUPERFAMILY Mitochondrial carrier 49 296 IPR023395 -
Vium12114g00007 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Vium12114g00007 314 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Vium12114g00007 314 PRINTS Mitochondrial carrier protein signature 61 75 IPR002067 GO:0055085
Vium12114g00007 314 PRINTS Mitochondrial carrier protein signature 48 61 IPR002067 GO:0055085
Vium12114g00007 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Vium12114g00007 314 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 24 309 - -
Vium12114g00007 314 Pfam Mitochondrial carrier protein 219 305 IPR018108 -
Vium12114g00007 314 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Vium12114g00007 314 Pfam Mitochondrial carrier protein 48 117 IPR018108 -
Vium12114g00007 314 Coils Coil 295 314 - -
Vium12114g00007 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 42 115 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12114g00007 Vium-Chr12114 18595 24640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12114g00007 50 302 Chloroplast and Mitochondria Gene Families AT2G30160 32.740 7.86e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12114g00007 K15111 - gmx:100800051 528.094