Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12113g00001 ATGAAGGCGTGGCCTGCTAGTGTTGTATACTCTTCACAAGAAAACCTCACTCGATACGCTTCTTCTTCTTCCTACTCTTCTTCCCCTCCCTCGATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGCTCTAACTATGGTGTCGTTTCGTCTCATCAAGATTGTTATGTCTCCAACGGCGGCGGCTCAAACTGGGGTTTGCCCTTTATGAGGGAATTCCTTGGGAGGAACTTTGAGGAACAGCCCAACAGTGATGGGGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGACGATGGTGGTGGGGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGAAGAGAACCTTAATGAGAATTCTAATAGTGGTTCGGGGCATTCCAAGCTCTGTGCAAGGGGGCATTGGAGACCGGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTCTACGGCCCTCAGAACTGGAACCTCATAGCCGAAAAGTTAGAAGGAAGATCAGGAAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGGAAGTACAGAGAACAGTCCAGTGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACAACAAGCAGCAATGTCTCTAGAGACACAGCCACTGCAGGGACAGAACCACCACCACCCTATTGTCTCAGTCTCCCTAACGGAGGACTTGCTAACAACAACATGCCGAGTTTCCCCTATGCCGCTGCACCCTTCCATGGAGTAGCTGCTCCTCCTGGTGGTGGTGGTGGGGTTGAGTATGGCTTAAATGGCTCACCCCACATGGCTGCTTCCAAAGAACCAATCTCAACCACCAAGTTGCCCCCTCCTCACATTGCCATGTATCCTCAACAAACACCGCTTGATTTCTTTTCAGGTGGTAGAAGCAATGACATGGTGGGAGAGTATTTTGGCCAGAACCATCAGCAACCGTCTGGTTTTTACTCTCATTACCCCCAATATCTGATGCTAATGCAACAACACCAAAACAGTCACAACTTTTACGGTTTCTCAAATTCCACAGCACAGATACTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACACAGAGATCAAGCCATGAGCAGTGACCCCCCAGATGCAATTCCTCCGCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1353 0.4826 MKAWPASVVYSSQENLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGGSNWGLPFMREFLGRNFEEQPNSDGAEEGKGSDSSDDGGGEDSDKVNHNANNFNEENLNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPPPYCLSLPNGGLANNNMPSFPYAAAPFHGVAAPPGGGGGVEYGLNGSPHMAASKEPISTTKLPPPHIAMYPQQTPLDFFSGGRSNDMVGEYFGQNHQQPSGFYSHYPQYLMLMQQHQNSHNFYGFSNSTAQILGSEASLSSVAEHRDQAMSSDPPDAIPPPFIDFLGVGAT 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12113g00001 450 MobiDBLite consensus disorder prediction 84 107 - -
Vium12113g00001 450 Pfam Myb-like DNA-binding domain 189 232 IPR001005 -
Vium12113g00001 450 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Vium12113g00001 450 Gene3D - 137 188 - -
Vium12113g00001 450 MobiDBLite consensus disorder prediction 256 281 - -
Vium12113g00001 450 SUPERFAMILY Homeodomain-like 137 230 IPR009057 -
Vium12113g00001 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Vium12113g00001 450 ProSiteProfiles Myb-like domain profile. 137 183 IPR001005 -
Vium12113g00001 450 CDD SANT 140 181 IPR001005 -
Vium12113g00001 450 Gene3D - 190 263 - -
Vium12113g00001 450 FunFam MYB transcription factor 137 188 - -
Vium12113g00001 450 SMART sant 188 236 IPR001005 -
Vium12113g00001 450 SMART sant 136 185 IPR001005 -
Vium12113g00001 450 CDD SANT 191 231 IPR001005 -
Vium12113g00001 450 PANTHER MYB PROTEIN-RELATED 126 274 - -
Vium12113g00001 450 MobiDBLite consensus disorder prediction 108 132 - -
Vium12113g00001 450 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Vium12113g00001 450 MobiDBLite consensus disorder prediction 81 133 - -
Vium12113g00001 450 FunFam MYB transcription factor 190 263 - -
Vium12113g00001 450 MobiDBLite consensus disorder prediction 256 273 - -
Vium12113g00001 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12113g00001 Vium-Chr12113 15551 18650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12113g00001 26 254 MYB Transcription Factor Family AT1G69560 53.782 8.85e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium12113g00001 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12113g00001 K09422 - gmx:100804537 570.081