Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium120g00003 ATGGTGCCGAAGCCTAAAACCGAAAGTGCATCGGGTTCCGCCGCCTTCTTCAAACCAGGTACTGTGGTGGAAGTCAGCTCTGAGGATGAAGGCTTCCGTGGCTCCTGGTTTTCCGGCACCATCATCCGCCATCTTGCTTCTGACAGGTTCCTAGTAGAGTACCACAACCTGATGGCAGACGATAAAAGCTCAAAGCATTTGAGGGAAATTTTGCATATGCGTCAACTGCGGCCCATCCTCCCACCAGAGACAGACCAAATATTCAAATTTGGGGATGAGGTTGACGCATTCTATAACGACGGTTGGTGGGAGGGATTTATAACTGAGGAATTAGAGAATGACAGATTTGCAGTGTATTTCAGGGCGTCCAAGGAGCAATTAGTGTTTTCCAAAGAACAACTCAGAATCCATCGAGAATGGTTCGATCACAAATGGGTCCCGCCACTCCAACAGAAAAACGATGAATCTAATGAAGCTGCAAAGCCAGATGAATCTAATGAAGCTGCAAAGCCAGATNCTGAAATACTGTATTCATTAACCACTGAAAGAACCAAGAATACAATGGTGCCGAAGCCTAAAACCGAAAGTGCATCGGGTTCCGCCGCCTTCTTCAAACCAGGTACTGTGGTGGAAGTCAGCTCTGAGGATGAAGGCTTCCGTGGCTCCTGGTTTTCCGGCACCATCATCCGCCATCTTGCTTCTGACAGGTTCCTAGTAGAGTACCACAACCTGATGGCAGACGATAAAAGCTCAAAGCATTTGAGGGAAATTTTGCATATGCGTCAACTGCGGCCCATCCTCCCACCAGAGACAGACCAAATATTCAAATTTGGGGATGAGGTTGACGCATTCTATAACGACGGTTGGTGGGAGGGATTTATAACTGAGGAATTAGAGAATGACAGATTTGCAGTGTATTTCAGGGCGTCCAAGGAGCAATTAGTGTTTTCCAAAGAACAACTCAGAATCCATCGAGAATGGTTCGATCACAAATGGGTCCCGCCACTCCAACAGAAAAACGATGAATCTAATGAAGCTGCAAAGCCAGATGAATCTAATGAAGCTGCAAAGCCAGATGAATCTAATGAAGCTGCAAAGCCAGATGAATTTGTCCAAGGGGCTATAGTCGAGGTTAGCAGTGATGAAGAGGGGTTCAGTGGAGCTTGGTTTGAAGCCACTATTGTTGAAGCAAAGGGAAATGACAAGTTCGTTGTTGAGTACCAGACTCTGTTAGCTGATGATGATTCTAATCTTTTGAGAGAGGAGATTGATATCTTTCACATAAGGCCTCCTCCGCCCAATACTAATGTTGACGGTCAATTCAATCTTCTTGACGAAGTGGATGCCCTGTACAATGACGGTTGGTGGGTGGGTGTGATTTCAAAAGTTCTTGCCGACTCCAAGTATGTGATTTATTTCAGGTCTTCTAACGAGGAACTAGAGTTTCATCACTCCCATTTGAGGCTGCATCAGGACTGGATTCATGGAAAATGGGCTATGCCTTCTAAGGCGATGAAGTTGTGA 1524 0.458 MVPKPKTESASGSAAFFKPGTVVEVSSEDEGFRGSWFSGTIIRHLASDRFLVEYHNLMADDKSSKHLREILHMRQLRPILPPETDQIFKFGDEVDAFYNDGWWEGFITEELENDRFAVYFRASKEQLVFSKEQLRIHREWFDHKWVPPLQQKNDESNEAAKPDESNEAAKPDXEILYSLTTERTKNTMVPKPKTESASGSAAFFKPGTVVEVSSEDEGFRGSWFSGTIIRHLASDRFLVEYHNLMADDKSSKHLREILHMRQLRPILPPETDQIFKFGDEVDAFYNDGWWEGFITEELENDRFAVYFRASKEQLVFSKEQLRIHREWFDHKWVPPLQQKNDESNEAAKPDESNEAAKPDESNEAAKPDEFVQGAIVEVSSDEEGFSGAWFEATIVEAKGNDKFVVEYQTLLADDDSNLLREEIDIFHIRPPPPNTNVDGQFNLLDEVDALYNDGWWVGVISKVLADSKYVIYFRSSNEELEFHHSHLRLHQDWIHGKWAMPSKAMKL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium120g00003 507 CDD Tudor_Agenet_AtDUF_rpt1_3 370 433 - -
Vium120g00003 507 MobiDBLite consensus disorder prediction 338 368 - -
Vium120g00003 507 MobiDBLite consensus disorder prediction 151 176 - -
Vium120g00003 507 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
Vium120g00003 507 CDD Tudor_Agenet_AtDUF_rpt1_3 204 268 - -
Vium120g00003 507 MobiDBLite consensus disorder prediction 343 366 - -
Vium120g00003 507 MobiDBLite consensus disorder prediction 156 170 - -
Vium120g00003 507 CDD Tudor_Agenet_AtDUF_rpt2_4 443 489 - -
Vium120g00003 507 Pfam Agenet domain 373 433 IPR008395 -
Vium120g00003 507 Pfam Agenet domain 278 336 IPR008395 -
Vium120g00003 507 Pfam Agenet domain 207 268 IPR008395 -
Vium120g00003 507 Pfam Agenet domain 20 81 IPR008395 -
Vium120g00003 507 Pfam Agenet domain 91 149 IPR008395 -
Vium120g00003 507 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 354 503 - -
Vium120g00003 507 SMART agenet_At_2 86 142 IPR014002 -
Vium120g00003 507 SMART agenet_At_2 439 495 IPR014002 -
Vium120g00003 507 SMART agenet_At_2 15 84 IPR014002 -
Vium120g00003 507 SMART agenet_At_2 368 436 IPR014002 -
Vium120g00003 507 SMART agenet_At_2 202 271 IPR014002 -
Vium120g00003 507 SMART agenet_At_2 273 329 IPR014002 -
Vium120g00003 507 Gene3D - 358 441 - -
Vium120g00003 507 CDD Tudor_Agenet_AtDUF_rpt2_4 278 323 - -
Vium120g00003 507 CDD Tudor_Agenet_AtDUF_rpt2_4 91 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium120g00003 Vium-Chr120 9552 18526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium120g00003 380 493 PHD Transcription Factor Family AT5G58610 30.370 8.13e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium120g00003 - - vum:124823040 1045.03