Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12098g00004 ATGATCCTTCCAATCTCCTTCTGTTACATTAAGCCTCAACTATGTATCATTACCACAATCTTCTTCTTTGCTACCACTGTTCTATCTTCTAATCCAAAATTTAAGGCCTGCACACCTAAAAGTTGTGGAAATGGCCCGTCCATTAAGTACCCTTTCTGGATTTCTTATGAACAGGAATCATTTTGTGGCTATCCCCACTTTGAGATCACTTGCATGGATAAAAATCCAATTCTCAGAACTCCTACTTACGATTTTCTGGTGAAAGATATCTCTTATTCTAACTCCTCATTTACTGTGGCCAACATGGCTGCCTATGAGGACAATTGTCCTGTTCCTTTATATAATTACAGCTTTGATCAAACTCCCTTTACCTACAGTTCAGAAAATTGGAATCTCTCTTTCTTCTACAACTGTACCACAGAACCCATAGATTACCCCACTTACCAAGTAGATTGTGCTAAAAATGCTTCACTTTATTCTTTTGCGGTTTTTCATAAGGAGGCACTACAGAACAAAAACTATTCCTTGGATGAGTGTCAGCTTATGGTTAATGCGCCATTTATCATGAATGCTTCTGTTAATTTCACTGGCTTATTGAGAATGAATTACATCGAGATTTTGAAGATGGGGTTTCTTTTGAATTGGACTGCACTTGATTGCAAGTACTGTGAGAAAAGTGGTGGACGTTGTGGATTTGATGGCAATCAGTTTCTCTGTTTCTGCAAGGATAAGTCCTACTTAAGAAGTTGTGGTAGTGGAGGAATAAATTGGAAAGTGAAAATCAGTATAGGTATTTGTTCTGGTGTAGTGGGAGCACTTATAGTGGGCATTTGCGTCTATATTTTTATTCGTAGAAGGAAGAACAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACGGAGAAGGGAAGTCACAGCTTCACTCAAAGCATTATACCTAGAGTTCATCTCTTCTCCTATGAAGAACTGGAAGAGGCCACGAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGGCGTTCTGTTGCAGTGAAGAGGTTGTACGAGAACAACTACAGGAGAGTTGCACAGTTCATGAATGAAATCAGAATCCTAACTGGTATAGCTCATCCAAATCTTGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTCTGCTTGTATATGAGTACATTCCTAATGGAACTGTTGCAGACCATCTTCATGGTCAACGATCTAAACCTGGAACACTCCCCTGGCATATCAGAATGAATATTGCCGTGGAAACAGCAAGTGCACTGAAATTTCTTCATCTCAGAGATATCATCCACAGAGATGTTAAAACCAACAATATTCTTCTTGACAGCAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCAGAACTTGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTATAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTGCCTGCTGTTGACATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGACCCAAACCTTGGTTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAGTGGTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGACCTTCAATGGAAGAAGTGTTGGAGACTCTGAAGGATATACAGAGTGATGGAAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACATCTGATGATGTTGTGTTGCTGAAGGATGATCCTCCTCCACCGTCACCTGATTCTAATGCTATAAGCAAGACAACAACACCAAATACTAGTGGATGA 1992 0.4091 MILPISFCYIKPQLCIITTIFFFATTVLSSNPKFKACTPKSCGNGPSIKYPFWISYEQESFCGYPHFEITCMDKNPILRTPTYDFLVKDISYSNSSFTVANMAAYEDNCPVPLYNYSFDQTPFTYSSENWNLSFFYNCTTEPIDYPTYQVDCAKNASLYSFAVFHKEALQNKNYSLDECQLMVNAPFIMNASVNFTGLLRMNYIEILKMGFLLNWTALDCKYCEKSGGRCGFDGNQFLCFCKDKSYLRSCGSGGINWKVKISIGICSGVVGALIVGICVYIFIRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSHSFTQSIIPRVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIRILTGIAHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPELVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNLGFESDFKVRKMISGVAELAFQCLQSSKEMRPSMEEVLETLKDIQSDGKSKSQPEVMDISSTSDDVVLLKDDPPPPSPDSNAISKTTTPNTSG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12098g00004 663 SMART serkin_6 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00004 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 661 IPR044652 GO:0004672
Vium12098g00004 663 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Vium12098g00004 663 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vium12098g00004 663 Gene3D Transferase(Phosphotransferase) domain 1 416 637 - -
Vium12098g00004 663 MobiDBLite consensus disorder prediction 614 663 - -
Vium12098g00004 663 SUPERFAMILY Protein kinase-like (PK-like) 321 626 IPR011009 -
Vium12098g00004 663 ProSiteProfiles Protein kinase domain profile. 339 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00004 663 FunFam Wall-associated receptor kinase-like 20 416 624 - -
Vium12098g00004 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vium12098g00004 663 Pfam Protein kinase domain 342 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00004 663 Pfam Wall-associated receptor kinase C-terminal 164 244 IPR032872 -
Vium12098g00004 663 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12098g00004 Vium-Chr12098 15119 18752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12098g00004 219 663 Receptor kinase-like Gene Family AT1G25390 53.377 2.63e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium12098g00004 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12098g00004 - - qsu:112024175 778.859