Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12098g00002 ATGACCAATTCATTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTACAGTATACGAAGGAAAACTACAAACAGGTAGCCCTGTGGCCGTAAAGTTACTGAAAGCATCCAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCCAGCATCAGTAGAACATCTCATGTTAATATAGTCACACTTGTTGGATTTTGTTTGGAAGGCTCAAAAAAGGCTCTCATCTATGAGTTTATGGCTAATGGTTCTTTGGATAAGTTCATCTACAACAGAGGGCCAGAAAATATTGTATCTTTGACCTGGGAGAATTTATATCAAATTGCCATAGGAATAGCTAGAGGGTTGGAGTACTTGCACAGAGGCTGCAACACTAAAATTTTACATTTTGACATAAAGCCACATAATATTCTTTTGGACGAGAAATTTTGTCCTAAAATATCAGATTTTGGACTAGCAAAGCTGTGTCCCAGGAATGAAAGCATTATTTCTATGTCTGATAAAAGAGGAACAATGGGGTATTATGCTCCTGAAATGGTCAATAGACATTTTGGTGGAGTTTCACAAAAGTCTGATGTGTACAGTTATGGAATGATGCTACTGGAAATGGTAGGAGGAAGGAAGAACATTAATCCTGAAGCTAGTCATACGAGTGAGATATACTTCCCACATTTTGCATACAGAAGACTTGATGTGGATAATGATGTGAGACCATATGAAGTGATGAATGCAGAAGAAGATGAGATTGCAAAGAGAATGACTGTAGTTGGCTTATGGTGCATTCAATCACTTCCAAGTGATAGACCTACAATGAGCAGAGTGGTAGAAATGTTGGAAGGTAACATGAATTCTTTGGAAATGCCTCCAAAGCCTTTGTTTTCTTCTCCTTCTAGATCAGAAACATAA 900 0.3778 MTNSFKVKLGQGGFGTVYEGKLQTGSPVAVKLLKASKRNGEEFINEVASISRTSHVNIVTLVGFCLEGSKKALIYEFMANGSLDKFIYNRGPENIVSLTWENLYQIAIGIARGLEYLHRGCNTKILHFDIKPHNILLDEKFCPKISDFGLAKLCPRNESIISMSDKRGTMGYYAPEMVNRHFGGVSQKSDVYSYGMMLLEMVGGRKNINPEASHTSEIYFPHFAYRRLDVDNDVRPYEVMNAEEDEIAKRMTVVGLWCIQSLPSDRPTMSRVVEMLEGNMNSLEMPPKPLFSSPSRSET 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12098g00002 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium12098g00002 299 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vium12098g00002 299 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vium12098g00002 299 Gene3D Transferase(Phosphotransferase) domain 1 79 286 - -
Vium12098g00002 299 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Vium12098g00002 299 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00002 299 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00002 299 PIRSF ILK 3 285 - -
Vium12098g00002 299 Pfam Protein kinase domain 6 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00002 299 FunFam PR5-like receptor kinase 78 288 - -
Vium12098g00002 299 SUPERFAMILY Protein kinase-like (PK-like) 7 277 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12098g00002 Vium-Chr12098 8992 10020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12098g00002 1 291 Receptor kinase-like Gene Family AT1G66980 59.661 1.78e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium12098g00002 Pkinase 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12098g00002 - - var:108343960 577.4