Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12098g00001 ATGACCAATTCATTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTACAGTATACGAAGGAAAACTACTAACAGGTAGCCCTGTGGCCGTAAAGTTACTGAAAGCATCCAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCCAGCATCAGTAGAACATCTCATGTTAATATTGTCACACTTGTTGGATTTTGTTTGGAAGGCTCTAAAAAGGCTCTCATCTATGAGTTTATGGCTAATGGTTCTTTGGATAAGTTCATCTACAACAGAGGGCCAGAAAATATTGTATCTTTGACCTGGGAGAATTTATATCAAATTGCCATAGGAATAGCTAGAGGGTTGGAGTACTTGCACAGAGGCTGCAACACTAAAATTTTACATTTTGACATAAAGCCACATAATATTCTTTTGGACGAGAATTTTTGTCCTAAAATATCAGATTTTGGACTAGCAAAGCTGTGTCCCAGGAATGAAAGCATTATTTCTATGTCTGATAAAAGAGGAACAATGGGGTATTATGCTCCTGAAATGGTCAATAGACATTNTAATTTAATTTAA 558 0.362 MTNSFKVKLGQGGFGTVYEGKLLTGSPVAVKLLKASKRNGEEFINEVASISRTSHVNIVTLVGFCLEGSKKALIYEFMANGSLDKFIYNRGPENIVSLTWENLYQIAIGIARGLEYLHRGCNTKILHFDIKPHNILLDENFCPKISDFGLAKLCPRNESIISMSDKRGTMGYYAPEMVNRHXNLI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12098g00001 185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium12098g00001 185 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vium12098g00001 185 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 182 IPR045874 GO:0004672
Vium12098g00001 185 Pfam Protein kinase domain 6 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00001 185 SMART serkin_6 3 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00001 185 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vium12098g00001 185 ProSiteProfiles Protein kinase domain profile. 3 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12098g00001 185 SUPERFAMILY Protein kinase-like (PK-like) 7 181 IPR011009 -
Vium12098g00001 185 Gene3D Transferase(Phosphotransferase) domain 1 79 183 - -
Vium12098g00001 185 FunFam Os07g0541700 protein 78 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12098g00001 Vium-Chr12098 5243 5964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12098g00001 1 181 Receptor kinase-like Gene Family AT4G18250 65.217 4.58e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium12098g00001 Pkinase 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12098g00001 - - vum:124821099 374.4