Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12085g00001 ATGAGCGCAGAACTTCATTTGCCTTCGCCTGTTTTATTGACCAGGGAGTGTTATTTTGGAAGGTACAGCAAGCAGTTATCTCATAACACATGGGGGGTTGTAGATGTATCATTGGAGAAATTTCTTCCTTCCCCGACCACCAATTTTCGGAAAAAACCATCTGGATGTTTAATTAAGTTAATGCCTAATGGACACTCTAAGGTCACATGGGTGGAGCATGTAGATGTAGAAGATAGTCAAGTGGACCAATATTTCCAGTCTCTATTCACCTCCACTCTAGCTTTTGGCGCAAGCCGTTGGATTAATTCCTTAATTCGATATGGTGAATGGTTACAAAGACTATTCGTAACACCGTTGGTTGCTGATGAAGGAGTTTTTATAGCCCAAACGGGGAGGACCAGTTTGCTGCAACTGGCAGATAGAATGATGAAAACATTTTGTGGAAACACGAGTTCCACCGCAGACAATCCATGGACCCAAATGGCTCATTCCCCATACGTGAGAATCATGGTGAAGAATAACATGGAAGAAGCTGGAAAGCCTCCAGGTACATCCGTTGTTTTCACCACTTCTGTTTGGCTTGATGTCTCCCGGAATCGACTGTTCAACTTCCTCCGCCATGAGAATTCCAGAACCAAGTGGGATTTACTTTCACGTAGACATACTATTCGAGAGTTTGCTACAATGCTGAAGGGTGAAAATCCAGGAAATCGTGTTTCCCTGATGAGAGTCCATAATTCACAGGGCAAGCTTGTAATCTGTTTTCTGCAAGAGAGTTACACAGACTCAACAGGTTCGTATATAGTGTATGCTCCACTGGATGAGTCAGCTGTGGCAGCTCTTGTACACGGAGCCAACCCTGACAAAGTGATGATCCTACCATCAGGGTTTAGCATTCTTCCTGAAAGGTTGCAAGGAGATGAAGATAGAAACAGTCGAAGTCTTCTAACTATTGCATTCCACATAGTTGAAAGTACCACTAGTAAGCCATATCTCGCTCCTGAATCAATCGAAACCATATACAAAGTCATTTCAGATACTGTTTACTCTATAACAAACTCAGTGCTGTATCATAATCATCGCAATAATTGGATGGATGATTCAAATTTCTAG 1113 0.4241 MSAELHLPSPVLLTRECYFGRYSKQLSHNTWGVVDVSLEKFLPSPTTNFRKKPSGCLIKLMPNGHSKVTWVEHVDVEDSQVDQYFQSLFTSTLAFGASRWINSLIRYGEWLQRLFVTPLVADEGVFIAQTGRTSLLQLADRMMKTFCGNTSSTADNPWTQMAHSPYVRIMVKNNMEEAGKPPGTSVVFTTSVWLDVSRNRLFNFLRHENSRTKWDLLSRRHTIREFATMLKGENPGNRVSLMRVHNSQGKLVICFLQESYTDSTGSYIVYAPLDESAVAALVHGANPDKVMILPSGFSILPERLQGDEDRNSRSLLTIAFHIVESTTSKPYLAPESIETIYKVISDTVYSITNSVLYHNHRNNWMDDSNF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12085g00001 370 Pfam START domain 1 105 IPR002913 GO:0008289
Vium12085g00001 370 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 354 IPR042160 -
Vium12085g00001 370 SUPERFAMILY Bet v1-like 131 322 - -
Vium12085g00001 370 SUPERFAMILY Bet v1-like 4 110 - -
Vium12085g00001 370 ProSiteProfiles START domain profile. 1 113 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12085g00001 Vium-Chr12085 1759 5331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12085g00001 1 355 Homeobox Transcription Factor Family AT4G04890 42.133 2.87e-95 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12085g00001 K09338 - jre:108992281 366.311