Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12082g00002 ATGGAATCTAAACACTTTGACTCCAATGGGGAAGTCTCTCTAAAGCAAAAATCAAAATCCATTTCGGCTGAGCCAACAGTCTCTACTTGTGAAAATGATTGCTTTGATTGCAATATTTGTTTGGAAGCAGCATATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGTTGGCCATGCATATACAAGTGGCTGCATGTTCAAAACTCATCTGTTGAACCAGACCAGCAGCAGACATGCCCAGTTTGTAAATCTAAGATCTCTCACACCTTAGTAGTCCCTCTCTATGGCCGTGGAACATCAAATTCAGAATCAAAAGCCAAGAAACTCCAGATGAGTCTTGGAATACCTCACAGGCCATCTCCTTACAACTTGAATGATTTGTTAACTTCTTCTGCTCGTGCACCAGCACATTCTGGCCACCAACTTCATCCAAGTTATTTCCAATCACAGCCAAGACCATTTCATTATCAGCAGTACTTCCCTCACCTCTATGAAAGCTCTGGCACCAATGGATTGCCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAATCCTATGATTGGTATGTTTGGTGAGATGGTCTTGACAAGAATTTTCGGGGTCTCAGATGCAAACTTGTTTTCATACCCACATAATGGAAATGGCAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAAGTCCCTGAACAGACTTTCCATCTTTCTCCTATGTTGTATAATTTTGTGTCTTCTATTATTCTGA 753 0.4157 MESKHFDSNGEVSLKQKSKSISAEPTVSTCENDCFDCNICLEAAYDPVVTLCGHLYCWPCIYKWLHVQNSSVEPDQQQTCPVCKSKISHTLVVPLYGRGTSNSESKAKKLQMSLGIPHRPSPYNLNDLLTSSARAPAHSGHQLHPSYFQSQPRPFHYQQYFPHLYESSGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGSPRMRRQEMQIDKSLNRLSIFLLCCIILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12082g00002 250 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Vium12082g00002 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Vium12082g00002 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Vium12082g00002 250 SMART ring_2 37 83 IPR001841 -
Vium12082g00002 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 135 IPR013083 -
Vium12082g00002 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium12082g00002 250 CDD RING-HC_AtRMA-like 35 85 - -
Vium12082g00002 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Vium12082g00002 250 SUPERFAMILY RING/U-box 33 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12082g00002 Vium-Chr12082 18523 20392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12082g00002 2 236 C3H Transcription Factor Family AT4G27470 45.417 1.82e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12082g00002 K10666 - gmx:100817526 385.571