Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1207g00003 ATGGAGGAACATCTCACTCCACTGGCTGTTACCCATCTCCTTCAACACACTCTCAGAAGTTTGTGCATCCATGAAAATTCCCAATGGGTCTATGCAGTCTTCTGGAGGATCTTGCCAAGAAACTACCCTCCACCCAAGTGGGAAGGACAAGGGGCATATGATAGATCAAGAGGAAACAGAAGGAATTGGATACTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCGGCAGCTCCTGAAATCAACTCTGGAGATTGTCCCACCTCGTCCGTTTATGGGAACTGTGAATTTCAGCCCTACCAAGGACTGCAACCGGAACTCTTCTTCAAGATGTCCCATGAGATCTACAACTATGGAGAAGGGTTAATAGGAAAAGTTGCTGCAGATCACAGCCACAAGTGGATATACAAAGAGCCTAATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCGCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGACCATAGCTCTTATTGCTGTGAGAGAAGGTGTTGTTCAATTAGGAGCTGTTCACAAGGTTTTTTTTCCCTCTTCTCCTCTCTCTTTGTCTCACCCACTTGGCAAAATCTACTTTACAATTTTACTCTTCTTCATGGAACTGAAGGTGATTGAAGACCTGAGCTATGTTGTTCTTCTAAGAAAAAAGTTCAGCTACATTGAGAGCATCCCTGGTGTGCTGTTGCCACATCCATCATCTTCTGCATACCCTTATAAAGTAGAAGGAGGGTATGGAGTTCCAGAACAATGGCATTTTCAAGGGAACCATCTTGCACCTCAAGCTGACTTATATGAGAACCACTTCAACTTGCCACTGAAGATAACTCCCTCGATGAGCAGCCTGGAAGCACTTCTGTCAAAGCTGCCCTCAGTGGTGCCACCACCACATCCGACACAACCACCACAGTCCCATCATCACCAACTTCTGGCATCACCCCAGCAAAGGCCACTGGAGTTCATGGGATCAATGCAGAAAGTGGCAAAAGAAGAGTTAGAAGAAGAAGTATACAGACCAGAACTTGACATTGGTGAGAGCAGCACTTCCATGTCAGGCTACCACCATCAACATCACTTCCATCAAGATCAGAATAATGTAACTAGGAGTGGAGCCAACGATGGATTTTGA 1176 0.4549 MEEHLTPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNRRNWILVWEDGFCNFAASAAPEINSGDCPTSSVYGNCEFQPYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSHPRTWEAQFLSGIKTIALIAVREGVVQLGAVHKVFFPSSPLSLSHPLGKIYFTILLFFMELKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVEGGYGVPEQWHFQGNHLAPQADLYENHFNLPLKITPSMSSLEALLSKLPSVVPPPHPTQPPQSHHHQLLASPQQRPLEFMGSMQKVAKEELEEEVYRPELDIGESSTSMSGYHHQHHFHQDQNNVTRSGANDGF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1207g00003 391 MobiDBLite consensus disorder prediction 307 327 - -
Vium1207g00003 391 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 191 IPR025610 -
Vium1207g00003 391 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 219 260 - -
Vium1207g00003 391 MobiDBLite consensus disorder prediction 360 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1207g00003 Vium-Chr1207 68647 70852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1207g00003 15 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.461 1.43e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1207g00003 - - vun:114173114 684.1