Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1207g00001 ATGTATAGGGTTCACTCTCAAATCCTTCTCAGCAATGGTGCTATCACCAACCCCCCTATTCTTTCTCCATATTCTTCTTCTTCTTTACCCTCGCTGCCTTATGTTTCCAACTACCAGAAACAATCAGCTCCATCCCCAGCTTCTTCATCCGGGAACAAAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTAGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGGTACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTTCCCGTCTTCTTTTACAAAGAGATTATAGGCCTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGACTGTTACCCATGTGTAATCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAATTCAACTTGCCCTCTCTGTAGAGGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGAGGTGTCAGGCAGTGGTGGAGGTGGGGTTGGGGTTGCTTCTTTTCACAAAACTGTAGAAAGCCACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTCAGAAGCACAAACAATGGAGATGGAGTGGAGAGAGGTGAATGTGAGAGCAGTAGTGGAAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTCTAGGCCCTCCTAGAGGTGATGGAGGCAGTGGCAGCATGAGACAACTGAAGGGAAGAACAGCTCCAAATGGAAGTTCTTTCATTGATGGGGATATTGAGGGTAAGAAAATCAACCTTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGTCAGGTTCATCTCATGCTCACTTCCATAATTCTACTCTCTCTGCAACTTTGCCATGGATGAATAAAGCCAGAGGTATCTGA 1143 0.4287 MYRVHSQILLSNGAITNPPILSPYSSSSLPSLPYVSNYQKQSAPSPASSSGNKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSAFDFESQLEEDEVSGSGGGGVGVASFHKTVESHIVNGKRVFSVRLGKFRSTNNGDGVERGECESSSGNLDVRRCYSMGSFQYVVADSDLRVALGPPRGDGGSGSMRQLKGRTAPNGSSFIDGDIEGKKINLARKGESFSVSKIWQWSRKDKLSGSSHAHFHNSTLSATLPWMNKARGI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1207g00001 380 Pfam Ring finger domain 146 189 IPR001841 -
Vium1207g00001 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 194 IPR013083 -
Vium1207g00001 380 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Vium1207g00001 380 SUPERFAMILY RING/U-box 126 195 - -
Vium1207g00001 380 FunFam RING-H2 finger protein ATL46 109 194 - -
Vium1207g00001 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 346 - -
Vium1207g00001 380 CDD RING-H2_EL5-like 146 189 - -
Vium1207g00001 380 SMART ring_2 147 188 IPR001841 -
Vium1207g00001 380 MobiDBLite consensus disorder prediction 297 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1207g00001 Vium-Chr1207 18981 20940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1207g00001 48 358 C3H Transcription Factor Family AT2G18650 40.533 1.35e-60 199