Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12073g00001 ATGGAAGAAGCAATGAGGCGTCTCAACGGTGTGGCTCCGATTCTCGGACCCGACCCGAAAGAGTCATCTGTCGGTGAAAACCCTAAACGCTCCACCGCCGTCAACAAGCGGACTTTAAGAGAAGACGGCGGCGGTGGAGCCATGAGGTATCGTGGTGTGAGGCGCAGGCCGTGGGGACGTTATGCCGCCGAGATTAGGGACCCTCAGTCGAAGGAGCGACGGTGGCTGGGAACCTTCGACACCGCGGAAGAAGCTGCCTGCGCCTACGACTGCGCTGCCCGAGCCATGCGCGGTCTCAAGGCTCGCACCAACTTCGTGTACCCCACTTCTCCGCAAGCTTCTTCCGCCACAGCCGACCACTTCTTTCATTCTTTTAGTAATAACAACTTCACCAAACACTCTCCGTCACTACCCTTTGCCAGCCACCGTAGTCGCCACTCAACTGGTTCCGCCAGCTGCTTTGACTACCCTACCGCCGTTGACTTTTCCTTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACACTTCCTCAAATAACCCTTCCATGCTTTCTTCTTCCACCCACAACTTCCACGACCAGTTCTACAACAAGGGTTCTTCTACTTTTCCATCGTTACCAACTGTTTCTTCTTCTTCTTCTTCATCTTTACCTCTTATTCCTAGTTATTCGGTGAGTTACCCTTTGGAAGGCGCTTCGTCTGTTAACGTGAACACGGTCTGTGGAACTAATTTCACTGAAAAAGGTGATGATGACAGTGGGTCTGGATTTTTCTCTCGAGAGTCTTCGGATTCGGGATTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAGCGAAGCCTAATAAATGCGAGAGTTTGCCAAAAATGGAGAGTGTCCGAAACCCTCAGGAGTCCGTTCTTCCTTCTCTTATTTCTGAATCAACACTTGTTTCCACCGCGCAATGCTATGATGACACGAAGAAGGGGTTTCATAAGAATGAGAGTTTCGGCTTTTCTTTCGATCATCAGGGTCTTCCCATGCAGAAATTTGACAACTTTAATGGGTTTCATCACTTGCAGGGTATGGCTATGGGGAATGAACAAACCATGACGAATCATGCAGAGAATTGCATCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTGCAATCAGGATGCAAAATGCTTAG 1209 0.4897 MEEAMRRLNGVAPILGPDPKESSVGENPKRSTAVNKRTLREDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQASSATADHFFHSFSNNNFTKHSPSLPFASHRSRHSTGSASCFDYPTAVDFSFSNPRNPSSSLNMLLLRDLINTSSNNPSMLSSSTHNFHDQFYNKGSSTFPSLPTVSSSSSSSLPLIPSYSVSYPLEGASSVNVNTVCGTNFTEKGDDDSGSGFFSRESSDSGLLEEIVNKFLPKAKPNKCESLPKMESVRNPQESVLPSLISESTLVSTAQCYDDTKKGFHKNESFGFSFDHQGLPMQKFDNFNGFHHLQGMAMGNEQTMTNHAENCIVEDVFQYQELLNSFAIRMQNA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12073g00001 402 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 230 - -
Vium12073g00001 402 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vium12073g00001 402 MobiDBLite consensus disorder prediction 33 49 - -
Vium12073g00001 402 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vium12073g00001 402 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Vium12073g00001 402 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Vium12073g00001 402 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vium12073g00001 402 MobiDBLite consensus disorder prediction 1 50 - -
Vium12073g00001 402 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Vium12073g00001 402 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Vium12073g00001 402 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vium12073g00001 402 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12073g00001 Vium-Chr12073 30502 31962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12073g00001 1 287 AP2-EREBP Transcription Factor Family AT1G24590 37.748 6.72e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium12073g00001 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12073g00001 - - vum:124821082 741.495