Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12062g00001 ATGGTGGTTACTGATGAAAGGAACCGCGATCGTGCGAACAGGAGGGATGTGGTGGAGCTAACACAATATGATCAAGCTGTAACTGTAGCATATTATGGGGAGGAGTTGCATGGTGGCGTACCTCTATCTCACTTCTCCAGAATCTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAAGAAATACAAAATATTGAATAATAGTCCGACCAAGCAAGCTACGTGTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTTATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCGTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATCATTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGACGGGATTGAGCGCCGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAGTTGAACCAACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTAGATGGGGCCTTTCTGAATTTTGATAGCTGCACAAAACAACAAAAAATGGGAGGCAAAGATAACATGGATACTGATCTTACATGCAATAGCTCAAAGAGAAAACTTGGAAAATCTGTCCCACTTGATATCCAAAAGAAAAGAAAGGCAAACTCGTCGAGATTGAGACCTAAGGTTATGCCATCAGTAGAACAACCTGAAGATGGTAGTGAGGAAGCTCTCTCAGAAGTTATGGAGGAGTTTAGAATGCTTGAGTTTGAAGATGTCAGTGGCTTTGAAAATTTTAGCATCATCGTTGATGGAGTGTCAATAGATGCTGAGTTCCCTGACGATGTTAGAAACAAGTACTACAGGCTATGTTGTAGTCAGCATGCATTTCTTCATGAGAATCTGATCAAGGGCATGAACTATAAGCTGGTTGCTGGAATTATATCTGAAACTGTCAACATTGCCGATGCCATAAAGGTTAGTATGCTATGCACCCCACGTTTTGAATTTGTCAACTGGGACAAAACATTGCTAGCCTTCGAGCATCTGGGTATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGGAAAATGATGTCTCAGAGGTCAAAAAGTACTTAGCCTCTAGAAACGAGTACAGTCGGGCGGATGATGAAATAAGGAACATAGAAGAGAAGCTCGAAGAATTGAAAGGAGCATGTAATGGTTTTGGTGCTTATATTGGGAGTTTGAAGGGCAAAGCTGAAAATTATCATAATAAATTTCGAAGAGAGGTCCATGCACCTTGGTGA 1452 0.4125 MVVTDERNRDRANRRDVVELTQYDQAVTVAYYGEELHGGVPLSHFSRISPLNMDKQNKVVEKKYKILNNSPTKQATCAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKFIACKTGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKVYIIRANNTRELDGAFLNFDSCTKQQKMGGKDNMDTDLTCNSSKRKLGKSVPLDIQKKRKANSSRLRPKVMPSVEQPEDGSEEALSEVMEEFRMLEFEDVSGFENFSIIVDGVSIDAEFPDDVRNKYYRLCCSQHAFLHENLIKGMNYKLVAGIISETVNIADAIKVSMLCTPRFEFVNWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEENDVSEVKKYLASRNEYSRADDEIRNIEEKLEELKGACNGFGAYIGSLKGKAENYHNKFRREVHAPW 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12062g00001 483 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Vium12062g00001 483 Coils Coil 426 453 - -
Vium12062g00001 483 SUPERFAMILY DNA-binding pseudobarrel domain 116 213 IPR015300 -
Vium12062g00001 483 Gene3D - 101 215 IPR015300 -
Vium12062g00001 483 CDD B3_DNA 120 211 IPR003340 GO:0003677
Vium12062g00001 483 SMART B3_2 122 213 IPR003340 GO:0003677
Vium12062g00001 483 MobiDBLite consensus disorder prediction 264 288 - -
Vium12062g00001 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 73 215 IPR044837 -
Vium12062g00001 483 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12062g00001 Vium-Chr12062 1606 6071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12062g00001 104 269 B3 DNA Binding Superfamily AT3G19184 39.766 9.16e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium12062g00001 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12062g00001 - - vra:106768002 906.36