Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12054g00003 ATGATAGAGCTGCCATCAAAGTTTCCAAAAATTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTAAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATTTTCTCTAAAGCAGCAGCTGCAGCACCATGTCTACTTTTTTTTGATGAATTTGATTCCATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGAGTTGTGAATCAATTTTTGACCGAGTTAGATGGTGTGGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACAAGTAAGAACATATGGAAAATGGATATTAATCATTGGCTATTATAA 432 0.3958 MIELPSKFPKIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSKNIWKMDINHWLL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12054g00003 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 130 IPR027417 -
Vium12054g00003 143 Gene3D - 1 137 IPR027417 -
Vium12054g00003 143 Pfam ATPase family associated with various cellular activities (AAA) 23 137 IPR003959 GO:0005524|GO:0016887
Vium12054g00003 143 PANTHER AAA-FAMILY ATPASE 2 131 - -
Vium12054g00003 143 SMART AAA_5 19 130 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12054g00003 Vium-Chr12054 2338 6261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12054g00003 2 131 Calmodulin-binding Proteins AT3G56690 48.485 3.17e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12054g00003 K13338 - vum:124821071 258.455