Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12054g00001 ATGATAGAGCTGCCATCAAAGTTTCCAAAAATTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTAAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATTTTCTCTAAAGCAGCAGCTGCAGCACCATGTCTACTTTTTTTTGATGAATTTGATTCCATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGAGTTGTGAATCAATTTTTGACCGAGTTAGATGGTGTGGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACAAGTAGACCAGATTTACTTGATGCTGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCTTGGAACGAGAGATTGGAAATTCTTGCTGTACTTTCTAGAAAGGTATGTGTTAGCATGACTCCTATGAGTATTGTCAATGTTTTGTTTCTTGTTTGCAAATTGCTCATGATATCTTGTTGGGGTTCTTATATACATGGTAAATAA 609 0.3974 MIELPSKFPKIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWNERLEILAVLSRKVCVSMTPMSIVNVLFLVCKLLMISCWGSYIHGK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12054g00001 202 ProSitePatterns AAA-protein family signature. 123 141 IPR003960 GO:0005524|GO:0016887
Vium12054g00001 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 178 IPR027417 -
Vium12054g00001 202 Gene3D - 154 172 - -
Vium12054g00001 202 PANTHER AAA-FAMILY ATPASE 2 173 - -
Vium12054g00001 202 FunFam Nuclear valosin-containing protein-like 1 159 - -
Vium12054g00001 202 Pfam ATPase family associated with various cellular activities (AAA) 23 150 IPR003959 GO:0005524|GO:0016887
Vium12054g00001 202 Gene3D - 1 153 IPR027417 -
Vium12054g00001 202 SMART AAA_5 19 155 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12054g00001 Vium-Chr12054 2338 6272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12054g00001 17 199 Calmodulin-binding Proteins AT3G56690 36.170 1.54e-36 133