Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12052g00001 ATGAGTGATATGGAGATGGAGAGGTACACCAGTCAGCGGTGGCGACCTACAGAAGATCAGGTCAGAATGATGACCAATATCTACAACCATGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCGTCTCGACTGAGGGTTTTTGCAGACGTCAGCGAATACAACGTCCACTGCTGGTTCAACAACCACAGCAATCGGATCAAGCGCTGGCAAGCGGAAATGGACCCCACCGGCACTCTCTTCTCACAACTGCCGCTATACATGTATGAATACGACTGGGTGATCATGAGGGCGCCGAGGCTGCTGGACTTGTTCCCCGTTCCGATCATCATTGACGACGATAGGGACGGACGACAAATCGCTCCACCCATGCTTCTCACATTCCGGACCAGAGCTCCCTCGACGGAGCTCTCCCTCAGACCACCGCAACCAGCTCGGGAATTTTTTCGCTGA 459 0.5425 MSDMEMERYTSQRWRPTEDQVRMMTNIYNHGVTHPSRAQVVEIASRLRVFADVSEYNVHCWFNNHSNRIKRWQAEMDPTGTLFSQLPLYMYEYDWVIMRAPRLLDLFPVPIIIDDDRDGRQIAPPMLLTFRTRAPSTELSLRPPQPAREFFR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12052g00001 152 ProSiteProfiles 'Homeobox' domain profile. 7 72 IPR001356 GO:0003677
Vium12052g00001 152 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Vium12052g00001 152 CDD homeodomain 13 73 IPR001356 GO:0003677
Vium12052g00001 152 Pfam Homeodomain 11 71 IPR001356 GO:0003677
Vium12052g00001 152 Gene3D - 11 76 - -
Vium12052g00001 152 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 5 69 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12052g00001 Vium-Chr12052 2542 3097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12052g00001 10 75 Wox Gene Family AT5G59340 37.879 7.43e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium12052g00001 Homeodomain 9.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12052g00001 - K13724 vum:124821070 307.375